Prupe.6G141100_v2.0.a1

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000898
Physical Location & Seq
Forward (+)
11424762 .. 11425857
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G141100.1

Sequence Viewer

Length: 441 bp
ATGGAGAAAGTGCTTGTGGGCAAAGTGCTTCTGACGATGATGATCGTCTGTGTGGTGGGCAGCGCTTCTGCGCAAAGTGCTTCTAACGTGAGAGCCACGTACAACCTGTACAATCCTCAGAATATCAACTGGGACTTGCGTACTGCGAGTGTCTTCTGCGCAACATGGGATGCTGATAAGCCATTGTCATGGCGCAGCAAATATGGATGGACTGCCTTCTGCGGACCCGTTGGCCCTACCGGACAAGATTCTTGTGGGAAGTGCTTACTGGTGACAAACACGGGCACAGGAGCTAAAGTGACAGTAAGGATTGTGGATCAGTGCAGCAATGGAGGGTTAGATTTGGACGTGAACGTGTTTAACCAGATAGACACTAATGGACAAGGCAATGCCCAAGGCCACCTTATTGTCAACTACGACTTTGTTGACTGTGGCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

147

Amino Acids

15.66

Weight (kDa)

5.16

Isoelectric Point (pI)

6.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 72, 160
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 324
AfaI GTAC 3 cut(s) 101, 110, 142
AfeI AGCGCT 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 354
AjiI CACGTC 1 cut(s) 349
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 1 cut(s) 324
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 2 cut(s) 232, 397
ApeKI GCWGC 3 cut(s) 60, 195, 324
AspLEI GCGC 4 cut(s) 65, 73, 161, 195
AspS9I GGNCC 2 cut(s) 224, 233
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 145
BbvI GCAGC 3 cut(s) 72, 207, 336
BccI CCATC 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 3 cut(s) 61, 196, 325
BlsI GCNGC 3 cut(s) 62, 197, 326
Bme18I GGWCC 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 224, 233
BmiI GGNNCC 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 160
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 145
BsaAI YACGTR 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bse1I ACTGG 2 cut(s) 134, 273
Bse3DI GCAATG 2 cut(s) 334, 394
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 175, 212
BseJI GATNNNNATC 1 cut(s) 41
BseMI GCAATG 2 cut(s) 334, 394
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 134, 273
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 3 cut(s) 72, 207, 336
BsgI GTGCAG 1 cut(s) 343
BshFI GGCC 2 cut(s) 234, 399
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 234, 399
Bsp1286I GDGCHC 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 2 cut(s) 42, 316
BspACI CCGC 1 cut(s) 222
BspANI GGCC 2 cut(s) 234, 399
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 334, 394
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 2 cut(s) 134, 273
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 2 cut(s) 42, 316
BssT1I CCWWGG 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 304, 431
BstAUI TGTACA 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 175, 212
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 4 cut(s) 65, 73, 161, 195
BstKTI GATC 2 cut(s) 45, 319
BstMBI GATC 2 cut(s) 42, 316
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 3 cut(s) 72, 207, 336
BstV2I GAAGAC 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 189
BsuRI GGCC 2 cut(s) 234, 399
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 2 cut(s) 175, 212
BtsIMutI CAGTG 1 cut(s) 326
CfoI GCGC 4 cut(s) 65, 73, 161, 195
Cfr13I GGNCC 2 cut(s) 224, 233
Csp6I GTAC 3 cut(s) 100, 109, 141
CviAII CATG 2 cut(s) 165, 189
CviJI RGCY 5 cut(s) 95, 181, 234, 293, 399
CviKI_1 RGCY 5 cut(s) 95, 181, 234, 293, 399
CviQI GTAC 3 cut(s) 100, 109, 141
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 44, 318
DpnII GATC 2 cut(s) 42, 316
Eco130I CCWWGG 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 224
Eco47III AGCGCT 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 2 cut(s) 168, 192
FaiI YATR 3 cut(s) 166, 190, 204
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 164, 188
Fnu4HI GCNGC 3 cut(s) 61, 196, 325
FokI GGATG 2 cut(s) 182, 219
Fsp4HI GCNGC 3 cut(s) 61, 196, 325
FspI TGCGCA 2 cut(s) 72, 160
GlaI GCGC 4 cut(s) 64, 72, 160, 194
GluI GCNGC 3 cut(s) 61, 196, 325
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 234, 399
HapII CCGG 1 cut(s) 240
HhaI GCGC 4 cut(s) 65, 73, 161, 195
Hin1II CATG 2 cut(s) 168, 192
Hin6I GCGC 4 cut(s) 63, 71, 159, 193
HinP1I GCGC 4 cut(s) 63, 71, 159, 193
HincII GTYRAC 2 cut(s) 412, 427
HindII GTYRAC 2 cut(s) 412, 427
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 3 cut(s) 352, 412, 427
Hpy188I TCNGA 2 cut(s) 33, 120
Hpy8I GTNNAC 3 cut(s) 352, 412, 427
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 304, 431
HpyCH4IV ACGT 4 cut(s) 87, 98, 348, 354
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 4 cut(s) 87, 98, 348, 354
Hsp92II CATG 2 cut(s) 168, 192
HspAI GCGC 4 cut(s) 63, 71, 159, 193
Kzo9I GATC 2 cut(s) 42, 316
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 6 cut(s) 115, 119, 253, 254, 273, 377
Lsp1109I GCAGC 3 cut(s) 72, 207, 336
LweI GCATC 1 cut(s) 160
MaeII ACGT 4 cut(s) 87, 98, 348, 354
MaeIII GTNAC 2 cut(s) 271, 298
MalI GATC 2 cut(s) 44, 318
MboI GATC 2 cut(s) 42, 316
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 287
MnlI CCTC 2 cut(s) 126, 326
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 187
MspI CCGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 2 cut(s) 42, 316
NlaIII CATG 2 cut(s) 168, 192
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 271, 298
NsbI TGCGCA 2 cut(s) 72, 160
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 3 cut(s) 62, 197, 326
Ppu21I YACGTR 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 224, 233
RsaI GTAC 3 cut(s) 101, 110, 142
RsaNI GTAC 3 cut(s) 100, 109, 141
RseI CAYNNNNRTG 1 cut(s) 187
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 61, 196, 325
Sau3AI GATC 2 cut(s) 42, 316
Sau96I GGNCC 2 cut(s) 224, 233
SduI GDGCHC 1 cut(s) 287
SetI ASST 7 cut(s) 90, 101, 108, 295, 351, 357, 405
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 187
SsiI CCGC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 304, 431
TaiI ACGT 4 cut(s) 90, 101, 351, 357
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 2 cut(s) 271, 298
TseI GCWGC 3 cut(s) 60, 195, 324
Tsp45I GTSAC 2 cut(s) 271, 298
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.