Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Reverse (-)

2128605 .. 2136126

Gene Structure 7522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG031900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGGATCAGCCCTTCATGGCGCAGCAGATATGGATGGACTGCCTTCTGCAGACCCAATGACCTTAGCGGAGCAGACACTTGCGGAAAATGCCTACCGTGGGAAGTGCTTCTGCTACTTCAAAATGTGAGAGCCACATACCACCTCTACAATCCGCAAGATAACAACTGGGACTTGCTTGCAGTAGGAGCCTTCTGCGCAACATTTGATGCCAATCAGCCCTTCGAATGGCGCAGCAGGTATGGATGGACCGCCTTCTGCGGACCTGAAGGCCCTAGCGGAGCAGAGGCCTGCGGAAAATGCCTACTGGTGACGAACATGGGGACAGGAGCTCAGGAAATAGTGAGAATTATCGATCAGTGCAGCAATGGAGGTTTGGATTTGGATGTGAATGTGTTTTCCCAGATAGACACTGATGGAAGAGGCTATGCACAAGGCGACCTTCTTGTTAACTATGACTTTGTGGACTGCGGCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin

Protein Analysis

159

Amino Acids

17.59

Weight (kDa)

4.45

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Barwin	PF00967	6 - 32	9.3e-07	Barwin family
Barwin	PF00967	41 - 157	9.1e-55	Barwin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	199
Acc36I	ACCTGC	1 cut(s)	228
AciI	CCGC	8 cut(s)	69, 84, 155, 252, 261, 279, 294, 471
AclWI	GGATC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	100, 228
AgsI	TTSAA	1 cut(s)	122
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw21I	GWGCWC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	271, 288
ApeKI	GCWGC	3 cut(s)	24, 234, 363
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	3 cut(s)	24, 200, 234
AspS9I	GGNCC	3 cut(s)	249, 263, 272
AsuHPI	GGTGA	1 cut(s)	322
AsuII	TTCGAA	1 cut(s)	225
AvaII	GGWCC	2 cut(s)	249, 263
BanII	GRGCYC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	3 cut(s)	36, 246, 375
BccI	CCATC	3 cut(s)	30, 240, 410
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	4 cut(s)	25, 235, 364, 472
BlsI	GCNGC	4 cut(s)	26, 236, 365, 473
Bme18I	GGWCC	2 cut(s)	249, 263
BmgT120I	GGNCC	3 cut(s)	249, 263, 272
BmiI	GGNNCC	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	178
Bpu10I	CCTNAGC	2 cut(s)	65, 333
Bpu14I	TTCGAA	1 cut(s)	225
Bsa29I	ATCGAT	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 228
Bse1I	ACTGG	2 cut(s)	173, 312
Bse3DI	GCAATG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	213
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	3 cut(s)	41, 251, 391
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	100, 228
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	2 cut(s)	173, 312
BseXI	GCAGC	3 cut(s)	36, 246, 375
BsgI	GTGCAG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	273, 290
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	185, 337
BslI	CCNNNNNNNGG	2 cut(s)	100, 228
BsmFI	GGGAC	2 cut(s)	185, 337
BsnI	GGCC	2 cut(s)	273, 290
Bsp119I	TTCGAA	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	6, 355
BspACI	CCGC	8 cut(s)	69, 84, 155, 252, 261, 279, 294, 471
BspANI	GGCC	2 cut(s)	273, 290
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	173, 312
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	2 cut(s)	6, 355
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	180, 292
BstDEI	CTNAG	2 cut(s)	65, 333
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	41, 251, 391
BstHHI	GCGC	3 cut(s)	24, 200, 234
BstKTI	GATC	2 cut(s)	9, 358
BstMBI	GATC	2 cut(s)	6, 355
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 188, 197, 300
BstSFI	CTRYAG	1 cut(s)	49
BstV1I	GCAGC	3 cut(s)	36, 246, 375
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	273, 290
BsuTUI	ATCGAT	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	41, 251, 391
BtsIMutI	CAGTG	2 cut(s)	365, 411
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	180, 292
CfoI	GCGC	3 cut(s)	24, 200, 234
Cfr13I	GGNCC	3 cut(s)	249, 263, 272
ClaI	ATCGAT	1 cut(s)	354
CviAII	CATG	2 cut(s)	18, 319
CviJI	RGCY	8 cut(s)	12, 134, 191, 220, 273, 290, 332, 426
CviKI_1	RGCY	8 cut(s)	12, 134, 191, 220, 273, 290, 332, 426
DdeI	CTNAG	2 cut(s)	65, 333
DpnI	GATC	2 cut(s)	8, 357
DpnII	GATC	2 cut(s)	6, 355
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	332
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	249, 263
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	2 cut(s)	21, 322
FaiI	YATR	7 cut(s)	19, 33, 139, 243, 320, 429, 456
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	2 cut(s)	185, 337
FatI	CATG	2 cut(s)	17, 318
Fnu4HI	GCNGC	4 cut(s)	25, 235, 364, 472
FokI	GGATG	3 cut(s)	48, 258, 398
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	4 cut(s)	25, 235, 364, 472
FspBI	CTAG	1 cut(s)	276
FspI	TGCGCA	1 cut(s)	199
GlaI	GCGC	3 cut(s)	23, 199, 233
GluI	GCNGC	4 cut(s)	25, 235, 364, 472
HaeIII	GGCC	2 cut(s)	273, 290
HhaI	GCGC	3 cut(s)	24, 200, 234
Hin1II	CATG	2 cut(s)	21, 322
Hin6I	GCGC	3 cut(s)	22, 198, 232
HinP1I	GCGC	3 cut(s)	22, 198, 232
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HpaI	GTTAAC	1 cut(s)	451
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	451, 466
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	451, 466
HpyAV	CCTTC	7 cut(s)	24, 55, 202, 232, 263, 265, 452
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	51, 182, 363, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 188, 197, 300
HpyF3I	CTNAG	2 cut(s)	65, 333
Hsp92II	CATG	2 cut(s)	21, 322
HspAI	GCGC	3 cut(s)	22, 198, 232
KspAI	GTTAAC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	6, 355
LmnI	GCTCC	4 cut(s)	71, 188, 281, 329
LpnPI	CCDG	8 cut(s)	154, 223, 279, 293, 304, 312, 320, 416
Lsp1109I	GCAGC	3 cut(s)	36, 246, 375
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	2 cut(s)	8, 357
MboI	GATC	2 cut(s)	6, 355
MboII	GAAGA	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	1 cut(s)	348
MnlI	CCTC	4 cut(s)	155, 280, 365, 416
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	1 cut(s)	450
MwoI	GCNNNNNNNGC	4 cut(s)	90, 188, 197, 300
NdeII	GATC	2 cut(s)	6, 355
NlaIII	CATG	2 cut(s)	21, 322
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	310
NsbI	TGCGCA	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	26, 236, 365, 473
Psp124BI	GAGCTC	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	249, 263, 272
PstI	CTGCAG	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	4 cut(s)	25, 235, 364, 472
Sau3AI	GATC	2 cut(s)	6, 355
Sau96I	GGNCC	3 cut(s)	249, 263, 272
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	7 cut(s)	66, 147, 242, 268, 334, 376, 444
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	225
SinI	GGWCC	2 cut(s)	249, 263
Sse9I	AATT	1 cut(s)	348
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	8 cut(s)	69, 84, 155, 252, 261, 279, 294, 471
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	334
StuI	AGGCCT	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	225, 354
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	474
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	365, 418
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	24, 234, 363
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	6
TspRI	CASTG	2 cut(s)	365, 418
VpaK11BI	GGWCC	2 cut(s)	249, 263
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.