Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Reverse (-)

2226758 .. 2227257

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG033100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGGAATATAGTTTTGTTACTTATTGTCTGTGCAATAATGGGAAGTGCTTATGCCCAAAGTGCTTCTGATGTGAGATCCACATTCCACCACTACAATCCGCAGGATAACAACTGGGACTTGCTTGCAGTAGGTGCCTTCTGCGCCACATTTGATGAGGATTGGCCCTTCAAATGGAGCAGCAGATATGGATGGACAGCCTTCTGCGGACCTAATGGCCCTAGTGGAGGAGACGCTTGCGGAAAATGCCTACTGGAAACAGTAAGAATCATCGATCAGTGCAGCAATGGAGGTTTGGATTTGGATGTGAATGTGTTTAACCAGATAGACACAGATGGAAGAGGCTACGTGGAAGGACACCTTGTTGTCAACTATGACTTTGTGGACTGCGGCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin

Protein Analysis

132

Amino Acids

14.51

Weight (kDa)

4.34

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Barwin	PF00967	21 - 130	4.3e-43	Barwin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	4 cut(s)	101, 207, 240, 390
AclWI	GGATC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	174, 227
AgsI	TTSAA	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	2 cut(s)	164, 217
ApeKI	GCWGC	2 cut(s)	180, 282
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	165, 209, 218
AvaII	GGWCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	192, 294
BccI	CCATC	2 cut(s)	186, 329
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	3 cut(s)	181, 283, 391
BlsI	GCNGC	3 cut(s)	182, 284, 392
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	3 cut(s)	165, 209, 218
BmiI	GGNNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 227
Bse1I	ACTGG	2 cut(s)	119, 258
Bse3DI	GCAATG	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	273
BseGI	GGATG	2 cut(s)	197, 310
BseLI	CCNNNNNNNGG	2 cut(s)	174, 227
BseMI	GCAATG	1 cut(s)	292
BseNI	ACTGG	2 cut(s)	119, 258
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	192, 294
BsgI	GTGCAG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	166, 219
BshNI	GGYRCC	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	174, 227
BsmAI	GTCTC	1 cut(s)	225
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	166, 219
Bsp143I	GATC	2 cut(s)	77, 274
BspACI	CCGC	4 cut(s)	101, 207, 240, 390
BspANI	GGCC	2 cut(s)	166, 219
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	119, 258
BssMI	GATC	2 cut(s)	77, 274
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	126, 238
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	197, 310
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	80, 277
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	77, 274
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 134, 143, 246
BstV1I	GCAGC	2 cut(s)	192, 294
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	166, 219
BsuTUI	ATCGAT	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	197, 310
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	126, 238
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	165, 209, 218
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	242
CviJI	RGCY	4 cut(s)	166, 200, 219, 345
CviKI_1	RGCY	4 cut(s)	166, 200, 219, 345
DpnI	GATC	2 cut(s)	79, 276
DpnII	GATC	2 cut(s)	77, 274
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	225
FaiI	YATR	4 cut(s)	11, 54, 189, 375
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	131
Fnu4HI	GCNGC	3 cut(s)	181, 283, 391
FokI	GGATG	2 cut(s)	204, 317
Fsp4HI	GCNGC	3 cut(s)	181, 283, 391
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	3 cut(s)	181, 283, 391
HaeIII	GGCC	2 cut(s)	166, 219
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	267
Hpy166II	GTNNAC	2 cut(s)	370, 385
Hpy188I	TCNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	370, 385
HpyAV	CCTTC	4 cut(s)	148, 178, 211, 347
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	35, 128, 282
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 134, 143, 246
HpySE526I	ACGT	1 cut(s)	348
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	77, 274
LmnI	GCTCC	1 cut(s)	177
LpnPI	CCDG	4 cut(s)	89, 100, 239, 335
Lsp1109I	GCAGC	2 cut(s)	192, 294
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	2 cut(s)	79, 276
MboI	GATC	2 cut(s)	77, 274
MboII	GAAGA	1 cut(s)	351
MflI	RGATCY	1 cut(s)	77
MnlI	CCTC	4 cut(s)	151, 221, 284, 335
MseI	TTAA	1 cut(s)	318
MwoI	GCNNNNNNNGC	4 cut(s)	62, 134, 143, 246
NdeII	GATC	2 cut(s)	77, 274
NlaIV	GGNNCC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	182, 284, 392
Ppu21I	YACGTR	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	3 cut(s)	165, 209, 218
PsuI	RGATCY	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	3 cut(s)	181, 283, 391
Sau3AI	GATC	2 cut(s)	77, 274
Sau96I	GGNCC	3 cut(s)	165, 209, 218
SetI	ASST	5 cut(s)	136, 214, 295, 351, 363
SinI	GGWCC	1 cut(s)	209
SsiI	CCGC	4 cut(s)	101, 207, 240, 390
SspMI	CTAG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	273
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	284
TseI	GCWGC	2 cut(s)	180, 282
TspRI	CASTG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	225
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.