Rw3G002430

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000898
Physical Location & Seq
Reverse (-)
2161506 .. 2175616
14111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002430.1

Sequence Viewer

Length: 432 bp
ATGAGGAATATAGTTTTGTTACTTATTGTCTGTGCAATAATGGGAAGTGCTTATGCCCAAAGTGCTTCTGATGTGAGATCCACATTCCACCACTACAATCCGCAGGATAACAACTGGGACTTGCTTGCAGTAGATGCCTTCTGCGCCACATTTGATGAGGATTGGCCCTTCAAATGGAGCAGCAGATATGGATGGACAGCCTTCTGCGGACCTAATGGCCCTAGTGGAGGAGACGCTTGCGGAAAATGCCTACTGGGCATGGTGACGGACATGGGGACAGGAGCTCAGGAAATAGTGATAATTATCGATCAGTGCAGCAATGGAGGTTTGGATTTGGATGTGAATGTGTTTTCCCAGATAGACACTGATGGAAGAGGCTATGCACAAGGCGACCTTATTGTCAACTACGACTTTGTGGACTGCGGCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

143

Amino Acids

15.52

Weight (kDa)

4.05

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 21 - 141 4.3e-49 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AciI CCGC 4 cut(s) 101, 207, 240, 423
AclWI GGATC 1 cut(s) 72
AfiI CCNNNNNNNGG 2 cut(s) 174, 227
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 72
AoxI GGCC 2 cut(s) 164, 217
ApeKI GCWGC 2 cut(s) 180, 315
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 165, 209, 218
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 192, 327
BccI CCATC 2 cut(s) 186, 362
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 255
BisI GCNGC 3 cut(s) 181, 316, 424
BlsI GCNGC 3 cut(s) 182, 317, 425
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 165, 209, 218
BmrI ACTGGG 2 cut(s) 124, 263
BmsI GCATC 1 cut(s) 124
BmuI ACTGGG 2 cut(s) 124, 263
Bpu10I CCTNAGC 1 cut(s) 285
Bsa29I ATCGAT 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 302
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 227
Bse1I ACTGG 2 cut(s) 119, 258
Bse3DI GCAATG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 302
BseCI ATCGAT 1 cut(s) 306
BseGI GGATG 2 cut(s) 197, 343
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 174, 227
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 2 cut(s) 119, 258
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 192, 327
BsgI GTGCAG 1 cut(s) 334
BshFI GGCC 2 cut(s) 166, 219
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 286
BslFI GGGAC 2 cut(s) 131, 289
BslI CCNNNNNNNGG 2 cut(s) 174, 227
BsmAI GTCTC 1 cut(s) 225
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 2 cut(s) 131, 289
BsnI GGCC 2 cut(s) 166, 219
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 77, 307
BspACI CCGC 4 cut(s) 101, 207, 240, 423
BspANI GGCC 2 cut(s) 166, 219
BspCNI CTCAG 1 cut(s) 298
BspDI ATCGAT 1 cut(s) 306
BspPI GGATC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 2 cut(s) 119, 258
BssMI GATC 2 cut(s) 77, 307
Bst6I CTCTTC 1 cut(s) 367
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 126, 238
BstDEI CTNAG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 197, 343
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 2 cut(s) 80, 310
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 77, 307
BstMWI GCNNNNNNNGC 5 cut(s) 62, 134, 143, 246, 255
BstV1I GCAGC 2 cut(s) 192, 327
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 2 cut(s) 166, 219
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 2 cut(s) 197, 343
BtsIMutI CAGTG 2 cut(s) 317, 363
Cac8I GCNNGC 2 cut(s) 126, 238
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 165, 209, 218
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 1 cut(s) 242
CviAII CATG 2 cut(s) 259, 271
CviJI RGCY 5 cut(s) 166, 200, 219, 284, 378
CviKI_1 RGCY 5 cut(s) 166, 200, 219, 284, 378
DdeI CTNAG 1 cut(s) 285
DpnI GATC 2 cut(s) 79, 309
DpnII GATC 2 cut(s) 77, 307
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Ecl136II GAGCTC 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 286
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 2 cut(s) 262, 274
FaiI YATR 6 cut(s) 11, 54, 189, 260, 272, 381
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 2 cut(s) 131, 289
FatI CATG 2 cut(s) 258, 270
Fnu4HI GCNGC 3 cut(s) 181, 316, 424
FokI GGATG 2 cut(s) 204, 350
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 181, 316, 424
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 145
GluI GCNGC 3 cut(s) 181, 316, 424
HaeIII GGCC 2 cut(s) 166, 219
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 262, 274
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 403, 418
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 2 cut(s) 403, 418
HpyAV CCTTC 3 cut(s) 148, 178, 211
HpyCH4V TGCA 4 cut(s) 35, 128, 315, 383
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 134, 143, 246, 255
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 2 cut(s) 262, 274
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 2 cut(s) 77, 307
LmnI GCTCC 2 cut(s) 177, 281
LpnPI CCDG 6 cut(s) 89, 100, 239, 264, 272, 368
Lsp1109I GCAGC 2 cut(s) 192, 327
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 18, 262
MalI GATC 2 cut(s) 79, 309
MboI GATC 2 cut(s) 77, 307
MboII GAAGA 1 cut(s) 384
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 300
MnlI CCTC 4 cut(s) 151, 221, 317, 368
MwoI GCNNNNNNNGC 5 cut(s) 62, 134, 143, 246, 255
NdeII GATC 2 cut(s) 77, 307
NlaIII CATG 2 cut(s) 262, 274
NmuCI GTSAC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 182, 317, 425
Psp124BI GAGCTC 1 cut(s) 286
PspPI GGNCC 3 cut(s) 165, 209, 218
PsuI RGATCY 1 cut(s) 77
SacI GAGCTC 1 cut(s) 286
SatI GCNGC 3 cut(s) 181, 316, 424
Sau3AI GATC 2 cut(s) 77, 307
Sau96I GGNCC 3 cut(s) 165, 209, 218
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 214, 286, 328, 396
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 1 cut(s) 209
Sse9I AATT 1 cut(s) 300
SsiI CCGC 4 cut(s) 101, 207, 240, 423
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 1 cut(s) 286
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 300
TauI GCSGC 1 cut(s) 426
TscAI CASTG 2 cut(s) 317, 370
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 180, 315
Tsp45I GTSAC 1 cut(s) 262
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 2 cut(s) 317, 370
VpaK11BI GGWCC 1 cut(s) 209
XagI CCTNNNNNAGG 1 cut(s) 225
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.