RchiOBHm_Chr3g0450761

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000898
Physical Location & Seq
Reverse (-)
2165468 .. 2166073
606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41807

Sequence Viewer

Length: 438 bp
ATGGCCGGGAAACAATGCATCGTGTTTTTGGTGATGGTGTGTGCCGCGATGGCCGGAATTGCTTCTGCGCAAAGTGCTACGAACGTGAGAGCCACGTACCACCTCTACAATCCGCAGGACAACAACTGGGACTTGGGAGCCGTGAGTGCCTACTGCGCGACGTGGGATGCCGACAAGCCCTTGGAATGGCGCAGCAAGTACGGATGGACCGCCTTCTGTGGCCCCCAGGGCCCGACCGGACAAGCGGCCTGTGGAAAGTGCCTCCGAGTGACAAACACCGCTACAGGAGCTCAGGCGACGGTGAGGATTGTCGACCAGTGCAGCAACGGAGGGCTGGACTTGGACGTGAATGTGTTTAACCAGATAGACACGGACAAAAGTGGGTATCAGCAAGGACATCTTACAGTCAACTACGACTTTGTCGACTGTGGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

145

Amino Acids

15.56

Weight (kDa)

4.88

Isoelectric Point (pI)

12.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 25 - 143 3.2e-64 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
AccI GTMKAC 2 cut(s) 312, 423
AccII CGCG 2 cut(s) 47, 158
AciI CCGC 5 cut(s) 45, 113, 210, 245, 279
AcoI YGGCCR 2 cut(s) 3, 51
AfaI GTAC 2 cut(s) 98, 200
AfiI CCNNNNNNNGG 1 cut(s) 186
AjiI CACGTC 2 cut(s) 162, 346
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 292
AoxI GGCC 5 cut(s) 3, 51, 220, 229, 246
ApaI GGGCCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 192, 321
Asp700I GAANNNNTTC 1 cut(s) 61
AspLEI GCGC 3 cut(s) 70, 158, 192
AspS9I GGNCC 4 cut(s) 207, 221, 229, 230
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 43, 313
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 233, 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 204, 333
BccI CCATC 3 cut(s) 28, 43, 198
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 1 cut(s) 7
BfmI CTRYAG 1 cut(s) 282
BglI GCCNNNNNGGC 2 cut(s) 50, 228
BisI GCNGC 4 cut(s) 45, 193, 246, 322
BlsI GCNGC 4 cut(s) 46, 194, 247, 323
Bme1390I CCNGG 2 cut(s) 7, 227
Bme18I GGWCC 1 cut(s) 207
BmgBI CACGTC 2 cut(s) 162, 346
BmgT120I GGNCC 4 cut(s) 207, 221, 229, 230
BmiI GGNNCC 3 cut(s) 139, 223, 231
BmrFI CCNGG 2 cut(s) 7, 227
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 2 cut(s) 27, 157
BmuI ACTGGG 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 180, 225, 226
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 2 cut(s) 131, 316
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 180, 225, 226
BseGI GGATG 2 cut(s) 172, 209
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 131, 316
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 2 cut(s) 204, 333
BsgI GTGCAG 1 cut(s) 340
Bsh1236I CGCG 2 cut(s) 47, 158
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 5 cut(s) 5, 53, 222, 231, 248
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 3 cut(s) 6, 54, 237
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 5 cut(s) 5, 53, 222, 231, 248
Bsp120I GGGCCC 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 233, 292
BspACI CCGC 5 cut(s) 45, 113, 210, 245, 279
BspANI GGCC 5 cut(s) 5, 53, 222, 231, 248
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 2 cut(s) 47, 158
BspLI GGNNCC 3 cut(s) 139, 223, 231
BsrI ACTGG 2 cut(s) 131, 316
BssECI CCNNGG 3 cut(s) 180, 225, 226
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 301, 406, 428
BstBAI YACGTR 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 172, 209
BstFNI CGCG 2 cut(s) 47, 158
BstHHI GCGC 3 cut(s) 70, 158, 192
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 7 cut(s) 50, 59, 74, 146, 155, 228, 287
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 5, 225
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 233
BstUI CGCG 2 cut(s) 47, 158
BstV1I GCAGC 2 cut(s) 204, 333
BsuRI GGCC 5 cut(s) 5, 53, 222, 231, 248
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 2 cut(s) 162, 346
BtsCI GGATG 2 cut(s) 172, 209
BtsIMutI CAGTG 1 cut(s) 323
CfoI GCGC 3 cut(s) 70, 158, 192
Cfr13I GGNCC 4 cut(s) 207, 221, 229, 230
Csp6I GTAC 2 cut(s) 97, 199
CviQI GTAC 2 cut(s) 97, 199
DdeI CTNAG 1 cut(s) 291
EaeI YGGCCR 2 cut(s) 3, 51
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 2 cut(s) 233, 292
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 20
EcoT38I GRGCYC 2 cut(s) 233, 292
ErhI CCWWGG 1 cut(s) 180
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 143
FblI GTMKAC 2 cut(s) 312, 423
Fnu4HI GCNGC 4 cut(s) 45, 193, 246, 322
FokI GGATG 2 cut(s) 179, 216
FriOI GRGCYC 2 cut(s) 233, 292
Fsp4HI GCNGC 4 cut(s) 45, 193, 246, 322
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 3 cut(s) 69, 157, 191
GluI GCNGC 4 cut(s) 45, 193, 246, 322
HaeIII GGCC 5 cut(s) 5, 53, 222, 231, 248
HapII CCGG 3 cut(s) 6, 54, 237
HhaI GCGC 3 cut(s) 70, 158, 192
Hin6I GCGC 3 cut(s) 68, 156, 190
HinP1I GCGC 3 cut(s) 68, 156, 190
HincII GTYRAC 3 cut(s) 313, 409, 424
HindII GTYRAC 3 cut(s) 313, 409, 424
HpaII CCGG 3 cut(s) 6, 54, 237
HphI GGTGA 2 cut(s) 43, 313
Hpy166II GTNNAC 3 cut(s) 313, 409, 424
Hpy188I TCNGA 1 cut(s) 266
Hpy8I GTNNAC 3 cut(s) 313, 409, 424
Hpy99I CGWCG 2 cut(s) 163, 301
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 3 cut(s) 301, 406, 428
HpyCH4IV ACGT 4 cut(s) 84, 95, 161, 345
HpyCH4V TGCA 2 cut(s) 18, 321
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 59, 74, 146, 155, 228, 287
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 4 cut(s) 84, 95, 161, 345
HspAI GCGC 3 cut(s) 68, 156, 190
LmnI GCTCC 2 cut(s) 137, 287
Lsp1109I GCAGC 2 cut(s) 204, 333
LweI GCATC 2 cut(s) 27, 157
MaeII ACGT 4 cut(s) 84, 95, 161, 345
MaeIII GTNAC 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 233, 292
MluCI AATT 1 cut(s) 57
MnlI CCTC 4 cut(s) 113, 272, 297, 323
Mph1103I ATGCAT 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 1 cut(s) 357
MspI CCGG 3 cut(s) 6, 54, 237
MspR9I CCNGG 2 cut(s) 7, 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 2 cut(s) 47, 158
MwoI GCNNNNNNNGC 7 cut(s) 50, 59, 74, 146, 155, 228, 287
NciI CCSGG 1 cut(s) 7
NlaIV GGNNCC 3 cut(s) 139, 223, 231
NmuCI GTSAC 1 cut(s) 268
NsbI TGCGCA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 20
PasI CCCWGGG 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 4 cut(s) 46, 194, 247, 323
Ppu21I YACGTR 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 3 cut(s) 139, 223, 231
PspOMI GGGCCC 1 cut(s) 229
PspPI GGNCC 4 cut(s) 207, 221, 229, 230
PsyI GACNNNGTC 1 cut(s) 419
RsaI GTAC 2 cut(s) 98, 200
RsaNI GTAC 2 cut(s) 97, 199
SacI GAGCTC 1 cut(s) 292
SalI GTCGAC 2 cut(s) 311, 422
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 4 cut(s) 45, 193, 246, 322
Sau96I GGNCC 4 cut(s) 207, 221, 229, 230
ScrFI CCNGG 2 cut(s) 7, 227
SduI GDGCHC 2 cut(s) 233, 292
SetI ASST 6 cut(s) 87, 98, 105, 164, 292, 348
SfaNI GCATC 2 cut(s) 27, 157
SfcI CTRYAG 1 cut(s) 282
SfiI GGCCNNNNNGGCC 1 cut(s) 228
SinI GGWCC 1 cut(s) 207
Sse9I AATT 1 cut(s) 57
SsiI CCGC 5 cut(s) 45, 113, 210, 245, 279
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 2 cut(s) 5, 225
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 3 cut(s) 301, 406, 428
TaiI ACGT 4 cut(s) 87, 98, 164, 348
TaqI TCGA 2 cut(s) 312, 423
TasI AATT 1 cut(s) 57
TauI GCSGC 2 cut(s) 47, 248
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 192, 321
Tsp45I GTSAC 1 cut(s) 268
TspGWI ACGGA 3 cut(s) 216, 342, 386
TspRI CASTG 1 cut(s) 323
Tth111I GACNNNGTC 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 207
XmiI GTMKAC 2 cut(s) 312, 423
XmnI GAANNNNTTC 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.