RLG00000025702

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000898
Physical Location & Seq
Forward (+)
47742026 .. 47742697
672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025702

Sequence Viewer

Length: 390 bp
ATGGCCGGAAGTGCTTCTGCGCAAAGTGCTACTAACGTGAGAGCCACGTACCACCTATACAATCTGCAGGACAACAACTGGAACTTGCGAGCCATAAGTGCCTACTGCGCGACATGGGATGCCGACAAGCCCTTGGAATGGCGCAGCAAGTACGGATGGACCGCCTTTTGTGGCCCTGCAGGCCCTACCGGAGAAGAGGCCTGTGGAAAGTGCCTGCTAGTGACGAACACCGCGACAGGAGCTCAGGCGACGGTGAGGATTGTCGACCAGTGCAGCAACGGAGGGCTGGACTTGGACGTGAATGTGTTTAACCAGATAGACACAGACGGAAGTGGGTATCAGCAAGGACACCTTACAGTCAACTACGACTTTGTCGACTGTGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

130

Amino Acids

13.95

Weight (kDa)

4.41

Isoelectric Point (pI)

19.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 9 - 127 9e-62 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AccI GTMKAC 2 cut(s) 264, 375
AccII CGCG 2 cut(s) 110, 233
AciI CCGC 2 cut(s) 162, 231
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 50, 152
AfiI CCNNNNNNNGG 1 cut(s) 138
AjiI CACGTC 1 cut(s) 298
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 244
AoxI GGCC 4 cut(s) 3, 172, 181, 198
ApeKI GCWGC 2 cut(s) 144, 273
Asp700I GAANNNNTTC 1 cut(s) 13
AspLEI GCGC 3 cut(s) 22, 110, 144
AspS9I GGNCC 3 cut(s) 159, 173, 182
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 159
BanII GRGCYC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 156, 285
BccI CCATC 1 cut(s) 150
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 2 cut(s) 65, 177
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 145, 274
BlsI GCNGC 2 cut(s) 146, 275
Bme18I GGWCC 1 cut(s) 159
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 3 cut(s) 159, 173, 182
BmsI GCATC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 83, 268
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 124, 161
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 83, 268
BseXI GCAGC 2 cut(s) 156, 285
BsgI GTGCAG 1 cut(s) 292
Bsh1236I CGCG 2 cut(s) 110, 233
BshFI GGCC 4 cut(s) 5, 174, 183, 200
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 6, 189
BslI CCNNNNNNNGG 1 cut(s) 138
BsnI GGCC 4 cut(s) 5, 174, 183, 200
Bsp1286I GDGCHC 1 cut(s) 244
BspACI CCGC 2 cut(s) 162, 231
BspANI GGCC 4 cut(s) 5, 174, 183, 200
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 2 cut(s) 110, 233
BspMAI CTGCAG 2 cut(s) 69, 181
BsrI ACTGG 2 cut(s) 83, 268
BssECI CCNNGG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 253, 358, 380
Bst6I CTCTTC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 48
BstC8I GCNNGC 3 cut(s) 90, 181, 215
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 124, 161
BstFNI CGCG 2 cut(s) 110, 233
BstHHI GCGC 3 cut(s) 22, 110, 144
BstMWI GCNNNNNNNGC 6 cut(s) 11, 26, 98, 107, 180, 239
BstSFI CTRYAG 2 cut(s) 65, 177
BstUI CGCG 2 cut(s) 110, 233
BstV1I GCAGC 2 cut(s) 156, 285
BsuRI GGCC 4 cut(s) 5, 174, 183, 200
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 124, 161
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 3 cut(s) 90, 181, 215
CfoI GCGC 3 cut(s) 22, 110, 144
Cfr13I GGNCC 3 cut(s) 159, 173, 182
Csp6I GTAC 2 cut(s) 49, 151
CviAII CATG 1 cut(s) 114
CviJI RGCY 9 cut(s) 5, 44, 92, 130, 174, 183, 200, 242, 286
CviKI_1 RGCY 9 cut(s) 5, 44, 92, 130, 174, 183, 200, 242, 286
CviQI GTAC 2 cut(s) 49, 151
DdeI CTNAG 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 117
FaiI YATR 3 cut(s) 58, 95, 115
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 1 cut(s) 113
FblI GTMKAC 2 cut(s) 264, 375
Fnu4HI GCNGC 2 cut(s) 145, 274
FokI GGATG 2 cut(s) 131, 168
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 145, 274
FspBI CTAG 1 cut(s) 218
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 3 cut(s) 21, 109, 143
GluI GCNGC 2 cut(s) 145, 274
HaeIII GGCC 4 cut(s) 5, 174, 183, 200
HapII CCGG 2 cut(s) 6, 189
HhaI GCGC 3 cut(s) 22, 110, 144
Hin1II CATG 1 cut(s) 117
Hin6I GCGC 3 cut(s) 20, 108, 142
HinP1I GCGC 3 cut(s) 20, 108, 142
HincII GTYRAC 3 cut(s) 265, 361, 376
HindII GTYRAC 3 cut(s) 265, 361, 376
HpaII CCGG 2 cut(s) 6, 189
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 3 cut(s) 265, 361, 376
Hpy8I GTNNAC 3 cut(s) 265, 361, 376
Hpy99I CGWCG 1 cut(s) 253
HpyCH4III ACNGT 3 cut(s) 253, 358, 380
HpyCH4IV ACGT 3 cut(s) 36, 47, 297
HpyCH4V TGCA 3 cut(s) 67, 179, 273
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 26, 98, 107, 180, 239
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 3 cut(s) 36, 47, 297
Hsp92II CATG 1 cut(s) 117
HspAI GCGC 3 cut(s) 20, 108, 142
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 2 cut(s) 156, 285
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 218
MaeII ACGT 3 cut(s) 36, 47, 297
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 244
MnlI CCTC 4 cut(s) 190, 249, 275, 376
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 1 cut(s) 309
MspI CCGG 2 cut(s) 6, 189
MvnI CGCG 2 cut(s) 110, 233
MwoI GCNNNNNNNGC 6 cut(s) 11, 26, 98, 107, 180, 239
NlaIII CATG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 220
NsbI TGCGCA 1 cut(s) 21
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 2 cut(s) 230, 372
PdmI GAANNNNTTC 1 cut(s) 13
PflFI GACNNNGTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 146, 275
Ppu21I YACGTR 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 244
PspPI GGNCC 3 cut(s) 159, 173, 182
PstI CTGCAG 2 cut(s) 69, 181
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 2 cut(s) 50, 152
RsaNI GTAC 2 cut(s) 49, 151
SacI GAGCTC 1 cut(s) 244
SalI GTCGAC 2 cut(s) 263, 374
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 145, 274
Sau96I GGNCC 3 cut(s) 159, 173, 182
SbfI CCTGCAGG 1 cut(s) 181
SdaI CCTGCAGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 244
SetI ASST 6 cut(s) 39, 50, 57, 244, 300, 354
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 2 cut(s) 65, 177
SfiI GGCCNNNNNGGCC 1 cut(s) 180
SinI GGWCC 1 cut(s) 159
Sse8387I CCTGCAGG 1 cut(s) 181
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 2 cut(s) 162, 231
SspMI CTAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 244
StuI AGGCCT 1 cut(s) 200
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 253, 358, 380
TaiI ACGT 3 cut(s) 39, 50, 300
TaqI TCGA 2 cut(s) 264, 375
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 275
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 144, 273
Tsp45I GTSAC 1 cut(s) 220
TspGWI ACGGA 3 cut(s) 168, 294, 342
TspRI CASTG 1 cut(s) 275
Tth111I GACNNNGTC 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 159
XmiI GTMKAC 2 cut(s) 264, 375
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.