Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

1313297 .. 1314288

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTTCCTTATCCTTCGTTTCCTCTTCTCACCTTACGCTACGCACTCCTTCTATTGCCCTACGCAGCACTGGCTCTTCTCCTCGAACCTCCGTTTCATTCTCCGTCAAGGCTCAATCCGTCGCGCTTTCACAGGACGATTTGAAGAAGCTCGCGGCGGAGAAAGCTGTGGAGGCAATTAAACCTGGGATGGTTCTAGGGCTCGGAACCGGATCCACCGCAGCTTTCGCTGTTGATCAGATCGGGAAACTACTCTCTTCCGGTGAACTCTACGATATTGTCGGTATCCCAACGTCGAAACGAACGGAGGAACAAGCACGGTCGTTAGGGATTCCTCTTGTTGGGTTAGATACACATCCGAGAATCGATCTCGCTATTGACGGAGCAGACGAGGTAGATCCGAATCTTGATTTAGTCAAAGGTCGTGGAGGTGCTCTTCTCCGTGAGAAAATGGTGGAAGCTGTGGCTGACAAGTTTATTGTTGTGGCTGATGATACCAAACTCGTTACAGGACTCGGTGGAAGTGGATTAGCTATGCCGGTGGAAGTTGTTCAATTCTGCTGGAACTTTAATTTGATTAGATTGCAAGACCTCTTCAAGGAATTTGGATGTGAATCAAAGCTTAGAGTTGATGGTGATGGCAAGCCTTATGTGACTGATAACAGTAATTACATTATTGATTTGTATTTTAAGACTCCTTTGAAGGATGGATTCGCTGCGGCTAAAGAGATTGGGAAGTTTCAAGGAGTGGTGGAGCATGGTCTGTTTCTCGGAATGGCTACTTCTGTCATTATCGCTGGAAAGAATGGCGTTGAAGTTATGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

276

Amino Acids

29.31

Weight (kDa)

5.72

Isoelectric Point (pI)

21.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	94 - 270	2e-60	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	125, 155
AciI	CCGC	4 cut(s)	155, 158, 219, 719
AclWI	GGATC	3 cut(s)	207, 220, 392
AcsI	RAATTY	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	341, 598
AgsI	TTSAA	6 cut(s)	145, 554, 598, 703, 743, 815
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	6 cut(s)	151, 167, 224, 461, 533, 622
AluI	AGCT	6 cut(s)	151, 167, 224, 461, 533, 622
Alw21I	GWGCWC	1 cut(s)	436
AlwI	GGATC	3 cut(s)	207, 220, 392
ApeKI	GCWGC	3 cut(s)	66, 221, 716
ApoI	RAATTY	1 cut(s)	602
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	3 cut(s)	23, 275, 647
BamHI	GGATCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	78, 233, 703
BccI	CCATC	4 cut(s)	184, 626, 632, 701
BciT130I	CCWGG	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	235
BfaI	CTAG	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	5 cut(s)	67, 156, 222, 717, 720
BlsI	GCNGC	5 cut(s)	68, 157, 223, 718, 721
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	208, 214
BmrFI	CCNGG	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	366
BsaBI	GATNNNNATC	3 cut(s)	354, 402, 613
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	2 cut(s)	209, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 598
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	76
Bse8I	GATNNNNATC	3 cut(s)	354, 402, 613
BseBI	CCWGG	1 cut(s)	186
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	4 cut(s)	195, 355, 614, 712
BseJI	GATNNNNATC	3 cut(s)	354, 402, 613
BseLI	CCNNNNNNNGG	2 cut(s)	341, 598
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	78, 233, 703
Bsh1236I	CGCG	2 cut(s)	125, 155
Bsh1285I	CGRYCG	1 cut(s)	323
BshVI	ATCGAT	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	3 cut(s)	210, 261, 539
BslI	CCNNNNNNNGG	2 cut(s)	341, 598
Bsp1286I	GDGCHC	2 cut(s)	204, 436
Bsp143I	GATC	5 cut(s)	212, 235, 240, 367, 397
BspACI	CCGC	4 cut(s)	155, 158, 219, 719
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	2 cut(s)	125, 155
BspLI	GGNNCC	2 cut(s)	208, 214
BspPI	GGATC	3 cut(s)	207, 220, 392
BspQI	GCTCTTC	2 cut(s)	82, 441
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	5 cut(s)	212, 235, 240, 367, 397
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	321, 665
Bst6I	CTCTTC	5 cut(s)	31, 82, 262, 441, 599
BstC8I	GCNNGC	2 cut(s)	153, 644
BstDEI	CTNAG	1 cut(s)	623
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	4 cut(s)	195, 355, 614, 712
BstFNI	CGCG	2 cut(s)	125, 155
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	5 cut(s)	215, 238, 243, 370, 400
BstMBI	GATC	5 cut(s)	212, 235, 240, 367, 397
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 164, 173, 227
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	2 cut(s)	125, 155
BstV1I	GCAGC	3 cut(s)	78, 233, 703
BstX2I	RGATCY	2 cut(s)	212, 397
BstYI	RGATCY	2 cut(s)	212, 397
Bsu15I	ATCGAT	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	366
BtsCI	GGATG	4 cut(s)	195, 355, 614, 712
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	153, 644
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	538
ClaI	ATCGAT	1 cut(s)	366
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	1 cut(s)	758
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	5 cut(s)	214, 237, 242, 369, 399
DpnII	GATC	5 cut(s)	212, 235, 240, 367, 397
Eam1104I	CTCTTC	5 cut(s)	31, 82, 262, 441, 599
EarI	CTCTTC	5 cut(s)	31, 82, 262, 441, 599
EciI	GGCGGA	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	1 cut(s)	761
FaiI	YATR	4 cut(s)	536, 651, 759, 821
FatI	CATG	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	67, 156, 222, 717, 720
FokI	GGATG	4 cut(s)	202, 342, 621, 719
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	5 cut(s)	67, 156, 222, 717, 720
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	5 cut(s)	67, 156, 222, 717, 720
HapII	CCGG	3 cut(s)	210, 261, 539
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	761
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	7 cut(s)	331, 363, 403, 513, 614, 694, 711
HpaII	CCGG	3 cut(s)	210, 261, 539
HphI	GGTGA	3 cut(s)	23, 275, 647
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	5 cut(s)	206, 240, 360, 402, 773
Hpy188III	TCNNGA	2 cut(s)	244, 407
Hpy8I	GTNNAC	1 cut(s)	266
Hpy99I	CGWCG	2 cut(s)	125, 298
HpyAV	CCTTC	3 cut(s)	25, 60, 697
HpyCH4III	ACNGT	2 cut(s)	321, 665
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	586
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 164, 173, 227
HpyF3I	CTNAG	1 cut(s)	623
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	761
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	212, 235, 240, 367, 397
LguI	GCTCTTC	2 cut(s)	82, 441
LmnI	GCTCC	2 cut(s)	383, 754
Lsp1109I	GCAGC	3 cut(s)	78, 233, 703
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	505, 652
MalI	GATC	5 cut(s)	214, 237, 242, 369, 399
MboI	GATC	5 cut(s)	212, 235, 240, 367, 397
MboII	GAAGA	6 cut(s)	18, 69, 157, 249, 428, 586
MflI	RGATCY	2 cut(s)	212, 397
MhlI	GDGCHC	2 cut(s)	204, 436
MluCI	AATT	5 cut(s)	177, 554, 571, 602, 667
MlyI	GAGTC	2 cut(s)	507, 688
MnlI	CCTC	9 cut(s)	34, 93, 100, 166, 301, 345, 385, 422, 602
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	3 cut(s)	180, 570, 690
MspI	CCGG	3 cut(s)	210, 261, 539
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	125, 155
MwoI	GCNNNNNNNGC	4 cut(s)	72, 164, 173, 227
NdeII	GATC	5 cut(s)	212, 235, 240, 367, 397
NlaIII	CATG	1 cut(s)	761
NlaIV	GGNNCC	2 cut(s)	208, 214
NmuCI	GTSAC	1 cut(s)	652
PciSI	GCTCTTC	2 cut(s)	82, 441
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	5 cut(s)	331, 363, 403, 614, 711
PkrI	GCNGC	5 cut(s)	68, 157, 223, 718, 721
PleI	GAGTC	2 cut(s)	507, 688
PpsI	GAGTC	2 cut(s)	507, 688
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	208, 214
PsuI	RGATCY	2 cut(s)	212, 397
SapI	GCTCTTC	2 cut(s)	82, 441
SaqAI	TTAA	3 cut(s)	180, 570, 690
SatI	GCNGC	5 cut(s)	67, 156, 222, 717, 720
Sau3AI	GATC	5 cut(s)	212, 235, 240, 367, 397
SchI	GAGTC	2 cut(s)	507, 688
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	204, 436
Sse9I	AATT	5 cut(s)	177, 554, 571, 602, 667
SsiI	CCGC	4 cut(s)	155, 158, 219, 719
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	321, 665
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	85, 296, 366
TasI	AATT	5 cut(s)	177, 554, 571, 602, 667
TauI	GCSGC	2 cut(s)	158, 722
TfiI	GAWTC	5 cut(s)	331, 363, 403, 614, 711
Tru1I	TTAA	3 cut(s)	180, 570, 690
Tru9I	TTAA	3 cut(s)	180, 570, 690
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	3 cut(s)	66, 221, 716
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	6 cut(s)	82, 94, 109, 320, 396, 431
TspRI	CASTG	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.