Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000421.1

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

273338 .. 273980

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000421.1_g000073.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgcattgccacagcccgaaatcatggccccagccacgttacacaaccactagtccttgccatcttgcttcctccaattccggcaacttctccatctccacccacctcctctccagtgaccctcagatcaacccaatattcaatcccaacccatctcctattcggtcatcaaaagaaacccatctccgaccttcaaaccctcttcttctccaagctcggcgagctcatcaaatccggcgagttctgacgtcaaaacgaaccgaggaccaagttaggagccttggcatccctctctcgatcctcgacgaccacccgaaaatatatttggccatcgacggcgccgacgaggtcgaccccaatctggatttggttaacggccgcggcggcgcgttgttaaaggagaagatggtggaggctgcgtcggagaagttcgtggtggtcaccgacgagacgaaactagtgacagggatggcaattaatgggttgttcttaaatatggtgaccgcgatgatcattgcaaggaaggatggagtgaatgtgcagaccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

183

Amino Acids

20.15

Weight (kDa)

9.23

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	3 cut(s)	381, 389, 506
AciI	CCGC	4 cut(s)	379, 381, 384, 504
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	327, 376
AcyI	GRCGYC	2 cut(s)	248, 339
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	142, 195
AhlI	ACTAGT	2 cut(s)	50, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	215, 224
AluI	AGCT	2 cut(s)	215, 224
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	3 cut(s)	26, 327, 376
ApeKI	GCWGC	1 cut(s)	416
AseI	ATTAAT	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	341, 389
AspS9I	GGNCC	2 cut(s)	27, 265
AsuHPI	GGTGA	2 cut(s)	433, 511
AvaII	GGWCC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	8 cut(s)	69, 101, 160, 189, 338, 400, 463, 521
BceAI	ACGGC	2 cut(s)	352, 391
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	443
BcuI	ACTAGT	2 cut(s)	50, 457
BfaI	CTAG	2 cut(s)	51, 458
BfoI	RGCGCY	1 cut(s)	342
BglI	GCCNNNNNGGC	1 cut(s)	384
BisI	GCNGC	4 cut(s)	379, 382, 385, 417
BlsI	GCNGC	4 cut(s)	380, 383, 386, 418
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	27, 265
BmiI	GGNNCC	3 cut(s)	29, 278, 340
BmsI	GCATC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	97
BsaHI	GRCGYC	2 cut(s)	248, 339
BsaJI	CCNNGG	3 cut(s)	261, 280, 379
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 404, 434, 522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	2 cut(s)	4, 513
BseDI	CCNNGG	3 cut(s)	261, 280, 379
BseGI	GGATG	3 cut(s)	285, 474, 532
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	2 cut(s)	4, 513
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	98
BseX3I	CGGCCG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	30
Bsh1236I	CGCG	3 cut(s)	381, 389, 506
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	28, 329, 378
BshNI	GGYRCC	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	81, 235
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	28, 329, 378
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	126, 297, 510
BspACI	CCGC	4 cut(s)	379, 381, 384, 504
BspANI	GGCC	3 cut(s)	28, 329, 378
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	3 cut(s)	381, 389, 506
BspLI	GGNNCC	3 cut(s)	29, 278, 340
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	4, 513
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	261, 280, 379
BssMI	GATC	3 cut(s)	126, 297, 510
BssNI	GRCGYC	2 cut(s)	248, 339
BssT1I	CCWWGG	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	2 cut(s)	248, 339
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	2 cut(s)	439, 499
BstF5I	GGATG	3 cut(s)	285, 474, 532
BstFNI	CGCG	3 cut(s)	381, 389, 506
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	341, 389
BstKTI	GATC	3 cut(s)	129, 300, 513
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	126, 297, 510
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 384
BstPI	GGTNACC	2 cut(s)	439, 499
BstUI	CGCG	3 cut(s)	381, 389, 506
BstV1I	GCAGC	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	28, 329, 378
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	521
BtsCI	GGATG	3 cut(s)	285, 474, 532
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	2 cut(s)	341, 389
Cfr13I	GGNCC	2 cut(s)	27, 265
Cfr42I	CCGCGG	1 cut(s)	382
CseI	GACGC	1 cut(s)	408
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	9 cut(s)	15, 28, 34, 215, 224, 279, 329, 378, 416
CviKI_1	RGCY	9 cut(s)	15, 28, 34, 215, 224, 279, 329, 378, 416
DdeI	CTNAG	1 cut(s)	123
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	3 cut(s)	128, 299, 512
DpnII	GATC	3 cut(s)	126, 297, 510
EaeI	YGGCCR	2 cut(s)	327, 376
EagI	CGGCCG	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	224
Eco91I	GGTNACC	2 cut(s)	439, 499
EcoICRI	GAGCTC	1 cut(s)	224
EcoO65I	GGTNACC	2 cut(s)	439, 499
EcoT14I	CCWWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	226
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	1 cut(s)	27
FaiI	YATR	3 cut(s)	25, 322, 497
FatI	CATG	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	379, 382, 385, 417
FokI	GGATG	3 cut(s)	272, 481, 539
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	379, 382, 385, 417
FspBI	CTAG	2 cut(s)	51, 458
GlaI	GCGC	2 cut(s)	340, 388
GluI	GCNGC	4 cut(s)	379, 382, 385, 417
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	28, 329, 378
HapII	CCGG	2 cut(s)	81, 235
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	2 cut(s)	341, 389
Hin1I	GRCGYC	2 cut(s)	248, 339
Hin1II	CATG	1 cut(s)	27
Hin6I	GCGC	2 cut(s)	339, 387
HinP1I	GCGC	2 cut(s)	339, 387
HincII	GTYRAC	2 cut(s)	352, 373
HindII	GTYRAC	2 cut(s)	352, 373
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	2 cut(s)	81, 235
HphI	GGTGA	2 cut(s)	433, 511
Hpy166II	GTNNAC	2 cut(s)	352, 373
Hpy188I	TCNGA	4 cut(s)	126, 188, 246, 424
Hpy188III	TCNNGA	2 cut(s)	295, 362
Hpy8I	GTNNAC	2 cut(s)	352, 373
Hpy99I	CGWCG	5 cut(s)	308, 338, 347, 424, 449
HpyAV	CCTTC	2 cut(s)	201, 517
HpyCH4IV	ACGT	2 cut(s)	37, 248
HpyCH4V	TGCA	3 cut(s)	4, 518, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 384
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	37, 248
Hsp92I	GRCGYC	2 cut(s)	248, 339
Hsp92II	CATG	1 cut(s)	27
HspAI	GCGC	2 cut(s)	339, 387
KasI	GGCGCC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	510
KspAI	GTTAAC	1 cut(s)	373
KspI	CCGCGG	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	126, 297, 510
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	6 cut(s)	44, 94, 127, 248, 347, 450
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	51, 458
MaeII	ACGT	2 cut(s)	37, 248
MaeIII	GTNAC	5 cut(s)	38, 116, 439, 460, 499
MalI	GATC	3 cut(s)	128, 299, 512
MboI	GATC	3 cut(s)	126, 297, 510
MboII	GAAGA	3 cut(s)	194, 197, 415
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	2 cut(s)	76, 474
MluNI	TGGCCA	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	339
MmeI	TCCRAC	2 cut(s)	211, 402
Mox20I	TGGCCA	1 cut(s)	329
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	4 cut(s)	372, 395, 477, 491
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	2 cut(s)	81, 235
MvnI	CGCG	3 cut(s)	381, 389, 506
MwoI	GCNNNNNNNGC	2 cut(s)	221, 384
NarI	GGCGCC	1 cut(s)	339
NdeII	GATC	3 cut(s)	126, 297, 510
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	3 cut(s)	29, 278, 340
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	4 cut(s)	116, 439, 460, 499
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 342
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	380, 383, 386, 418
PluTI	GGCGCC	1 cut(s)	342
PshBI	ATTAAT	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	226
PspEI	GGTNACC	2 cut(s)	439, 499
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	29, 278, 340
PspPI	GGNCC	2 cut(s)	27, 265
PsyI	GACNNNGTC	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	226
SacII	CCGCGG	1 cut(s)	382
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	372, 395, 477, 491
SatI	GCNGC	4 cut(s)	379, 382, 385, 417
Sau3AI	GATC	3 cut(s)	126, 297, 510
Sau96I	GGNCC	2 cut(s)	27, 265
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	7 cut(s)	40, 108, 193, 217, 226, 251, 351
SfaNI	GCATC	1 cut(s)	294
SfoI	GGCGCC	1 cut(s)	340
Sfr303I	CCGCGG	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	265
SpeI	ACTAGT	2 cut(s)	50, 457
Sse9I	AATT	2 cut(s)	76, 474
SsiI	CCGC	4 cut(s)	379, 381, 384, 504
SspDI	GGCGCC	1 cut(s)	338
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	2 cut(s)	51, 458
SstI	GAGCTC	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	280
TaiI	ACGT	2 cut(s)	40, 251
TaqI	TCGA	4 cut(s)	296, 303, 333, 351
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	76, 474
TauI	GCSGC	3 cut(s)	381, 384, 387
Tru1I	TTAA	4 cut(s)	372, 395, 477, 491
Tru9I	TTAA	4 cut(s)	372, 395, 477, 491
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	4 cut(s)	116, 439, 460, 499
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	4 cut(s)	116, 439, 460, 499
TspRI	CASTG	1 cut(s)	121
Tth111I	GACNNNGTC	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	51, 458
ZraI	GACGTC	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.