Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

15939655 .. 15942895

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATTGGCACTAGCCCGGCCACCGGTCCTTGCCATCTTGCTTCCTCCAATTTCGGCAACTCCTCCATTTCCACCCACCTCCTCTCCGGTGACCCTCGCATCAACCCAATACTCAATCCTAACCCATCTCCTATTCGGTCATCAAAAGAAACCCATCTCCGATTCCACTCTCTCGGACCTCCAAACCCTCTTCGTCTCCAAGCTCCGCGAGCTCATCAAATCGAAGAGTTTAGTCGAAATATTGGAATCCCTAGGTACCTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

9.57

Weight (kDa)

10.71

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccII	CGCG	1 cut(s)	208
AciI	CCGC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	18
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgeI	ACCGGT	1 cut(s)	23
AluBI	AGCT	2 cut(s)	203, 212
AluI	AGCT	2 cut(s)	203, 212
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	18
AsiGI	ACCGGT	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	255
AspA2I	CCTAGG	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	26, 176
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	26, 176
AvrII	CCTAGG	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	214
BccI	CCATC	3 cut(s)	42, 133, 162
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	12, 252
BlnI	CCTAGG	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	26, 176
BmgT120I	GGNCC	2 cut(s)	26, 176
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	2 cut(s)	23, 86
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	52, 71
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	3 cut(s)	17, 24, 87
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	251
Bst6I	CTCTTC	2 cut(s)	195, 219
BstC8I	GCNNGC	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	26, 176
Csp6I	GTAC	1 cut(s)	256
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	4 cut(s)	15, 20, 203, 212
CviKI_1	RGCY	4 cut(s)	15, 20, 203, 212
CviQI	GTAC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	195, 219
EarI	CTCTTC	2 cut(s)	195, 219
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	26, 176
Eco53kI	GAGCTC	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	1 cut(s)	267
FaiI	YATR	1 cut(s)	265
FatI	CATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	214
FspBI	CTAG	2 cut(s)	12, 252
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	3 cut(s)	17, 24, 87
Hin1II	CATG	1 cut(s)	267
HinfI	GANTC	2 cut(s)	162, 246
HpaII	CCGG	3 cut(s)	17, 24, 87
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	161, 176
Hpy188III	TCNNGA	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	267
KpnI	GGTACC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	3 cut(s)	30, 37, 100
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	2 cut(s)	12, 252
MaeIII	GTNAC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	182, 236
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	7 cut(s)	55, 73, 89, 92, 105, 189, 198
MspI	CCGG	3 cut(s)	17, 24, 87
MspR9I	CCNGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	17
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	89
PagI	TCATGA	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	162, 246
PinAI	ACCGGT	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	26, 176
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	26, 176
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	6 cut(s)	81, 181, 205, 214, 257, 261
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	26, 176
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	206
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	2 cut(s)	12, 252
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	251
TaqI	TCGA	2 cut(s)	222, 235
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	162, 246
TseFI	GTSAC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	26, 176
XmaJI	CCTAGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	12, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.