Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

29478225 .. 29479876

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G341500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTTCCTCCTTATCCCTCCTCTCACCCCACAATGCATCCACCACCCACCTTCTCCTGCGCACCCCAAAAACCCCTAACCTGCGCTCTTCTTCTTACAGGCCCATGTCCATCAAAGCTCGCACTGTCCCTGCTCTCACTCAAGACGAACTCAAGAAGCTTGCAGCCGATAAGGCCGTCGAATATGTCAAGAGCGGCATGGTCCTCGGCCTCGGCACTGGCTCAACGGCCGCCTTTGTGGTCTCAAAGCTCGGAGAGCTCTTGAAATCTGGTGAATTGCAGAACATAGTTGGAGTTCCAACTTCAAAACGCACGGAGGATCAAGCTCGCCAATTGGGTATCCCTCTTTCGGTTCTCGATGATCACCCCAAGATCGATTTGGCCATAGATGGTGCAGATGAGGTCGACCCAAATCTTGACTTGGTTAAAGGGCGTGGTGGGGCTTTGCTCAGAGAGAAAATGGTGGAGGCTGCTTCAGATAAGTTTGTTGTGGTGGCGGATGAGACCAAGTTGGTGACTGGCCTTGGAGGAAGTGGACTGGCAATGCCTGTGGAGGTTGTACAGTTTTGCTGGAAATATAACTTGGTGAGGCTTCAGGAGTTGTTTAACGAAGAAGGGGTTGAAGCAAAGTTGAGGTTGGATGGTGATGGAAAGCCTTATATCACTGATAACTTCAATTACATTGTGGATTTGTATTTCAAGAGTCCCATTAAAGATGGGCCGGCTGCCGGGAAGGAGATTTCGAAATTTGAAGGGGTTGTGGAACATGGGTTGTTCTTGGATATGGCGACCGCGGTCATCATTGCAGGCAAGGATGGAGTGGATGTTAAGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

280

Amino Acids

29.99

Weight (kDa)

5.89

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	794
AciI	CCGC	5 cut(s)	195, 231, 497, 792, 794
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	2 cut(s)	228, 381
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	2 cut(s)	459, 578
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	2 cut(s)	349, 728
AgsI	TTSAA	6 cut(s)	265, 306, 623, 676, 700, 752
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	5 cut(s)	119, 160, 250, 259, 326
AluI	AGCT	5 cut(s)	119, 160, 250, 259, 326
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	247, 497
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	7 cut(s)	101, 174, 208, 228, 381, 520, 719
ApeKI	GCWGC	3 cut(s)	164, 470, 725
ApoI	RAATTY	1 cut(s)	746
AspLEI	GCGC	2 cut(s)	63, 87
AspS9I	GGNCC	3 cut(s)	102, 202, 719
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	6 cut(s)	18, 284, 356, 526, 598, 656
AsuII	TTCGAA	1 cut(s)	743
AvaII	GGWCC	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	176, 457, 712
BccI	CCATC	6 cut(s)	119, 383, 635, 641, 710, 809
BceAI	ACGGC	2 cut(s)	161, 243
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciVI	GTATCC	1 cut(s)	350
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	247, 497
BfuAI	ACCTGC	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	5 cut(s)	165, 196, 231, 471, 726
BlsI	GCNGC	5 cut(s)	166, 197, 232, 472, 727
Bme1390I	CCNGG	1 cut(s)	730
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	102, 202, 719
BmrFI	CCNGG	1 cut(s)	730
BmsI	GCATC	1 cut(s)	47
BoxI	GACNNNNGTC	1 cut(s)	794
Bpu14I	TTCGAA	1 cut(s)	743
BpuEI	CTTGAG	2 cut(s)	126, 137
BpuMI	CCSGG	1 cut(s)	730
Bsa29I	ATCGAT	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	247, 497
BsaJI	CCNNGG	4 cut(s)	205, 211, 523, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 728
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	3 cut(s)	223, 523, 543
Bse3DI	GCAATG	2 cut(s)	549, 801
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	4 cut(s)	205, 211, 523, 792
BseGI	GGATG	5 cut(s)	38, 505, 646, 820, 829
BseLI	CCNNNNNNNGG	2 cut(s)	349, 728
BseMI	GCAATG	2 cut(s)	549, 801
BseMII	CTCAG	1 cut(s)	463
BseNI	ACTGG	3 cut(s)	223, 523, 543
BseRI	GAGGAG	1 cut(s)	11
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	176, 457, 712
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	794
Bsh1285I	CGRYCG	2 cut(s)	231, 792
BshFI	GGCC	7 cut(s)	103, 176, 210, 230, 383, 522, 721
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	2 cut(s)	231, 792
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	722, 729
BslFI	GGGAC	2 cut(s)	113, 690
BslI	CCNNNNNNNGG	2 cut(s)	349, 728
BsmAI	GTCTC	2 cut(s)	247, 497
BsmFI	GGGAC	2 cut(s)	113, 690
BsnI	GGCC	7 cut(s)	103, 176, 210, 230, 383, 522, 721
Bso31I	GGTCTC	2 cut(s)	247, 497
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	319, 361, 372
BspACI	CCGC	5 cut(s)	195, 231, 497, 792, 794
BspANI	GGCC	7 cut(s)	103, 176, 210, 230, 383, 522, 721
BspCNI	CTCAG	1 cut(s)	462
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	794
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	743
BspTNI	GGTCTC	2 cut(s)	247, 497
BsrBI	CCGCTC	1 cut(s)	195
BsrDI	GCAATG	2 cut(s)	549, 801
BsrFI	RCCGGY	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	559
BsrI	ACTGG	3 cut(s)	223, 523, 543
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	4 cut(s)	205, 211, 523, 792
BssMI	GATC	3 cut(s)	319, 361, 372
BssT1I	CCWWGG	1 cut(s)	523
Bst4CI	ACNGT	2 cut(s)	127, 564
Bst6I	CTCTTC	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	5 cut(s)	121, 162, 328, 723, 808
BstDEI	CTNAG	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	5 cut(s)	38, 505, 646, 820, 829
BstFNI	CGCG	1 cut(s)	794
BstHHI	GCGC	2 cut(s)	63, 87
BstKTI	GATC	3 cut(s)	322, 364, 375
BstMAI	GTCTC	2 cut(s)	247, 497
BstMBI	GATC	3 cut(s)	319, 361, 372
BstMCI	CGRYCG	2 cut(s)	231, 792
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 256
BstPAI	GACNNNNGTC	1 cut(s)	794
BstSCI	CCNGG	1 cut(s)	728
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	3 cut(s)	176, 457, 712
BstZI	CGGCCG	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	7 cut(s)	103, 176, 210, 230, 383, 522, 721
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	792
BtsCI	GGATG	5 cut(s)	38, 505, 646, 820, 829
BtsIMutI	CAGTG	3 cut(s)	123, 216, 663
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	5 cut(s)	121, 162, 328, 723, 808
CfoI	GCGC	2 cut(s)	63, 87
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	3 cut(s)	102, 202, 719
Cfr42I	CCGCGG	1 cut(s)	795
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	560
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	3 cut(s)	106, 199, 767
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	3 cut(s)	321, 363, 374
DpnII	GATC	3 cut(s)	319, 361, 372
EaeI	YGGCCR	2 cut(s)	228, 381
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	512
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	2 cut(s)	247, 497
Eco47I	GGWCC	1 cut(s)	202
Eco52I	CGGCCG	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	459, 578
EcoICRI	GAGCTC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	3 cut(s)	109, 202, 770
FaiI	YATR	9 cut(s)	107, 186, 200, 287, 386, 579, 660, 768, 785
FaqI	GGGAC	2 cut(s)	113, 690
FatI	CATG	3 cut(s)	105, 198, 766
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	5 cut(s)	165, 196, 231, 471, 726
FokI	GGATG	5 cut(s)	25, 512, 653, 827, 836
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	165, 196, 231, 471, 726
FspI	TGCGCA	1 cut(s)	62
GlaI	GCGC	2 cut(s)	62, 86
GluI	GCNGC	5 cut(s)	165, 196, 231, 471, 726
HaeIII	GGCC	7 cut(s)	103, 176, 210, 230, 383, 522, 721
HapII	CCGG	2 cut(s)	722, 729
HhaI	GCGC	2 cut(s)	63, 87
Hin1II	CATG	3 cut(s)	109, 202, 770
Hin6I	GCGC	2 cut(s)	61, 85
HinP1I	GCGC	2 cut(s)	61, 85
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	703
HpaII	CCGG	2 cut(s)	722, 729
HphI	GGTGA	6 cut(s)	18, 284, 356, 526, 598, 656
Hpy166II	GTNNAC	2 cut(s)	406, 536
Hpy188I	TCNGA	3 cut(s)	254, 452, 478
Hpy188III	TCNNGA	8 cut(s)	143, 154, 190, 262, 356, 416, 596, 700
Hpy8I	GTNNAC	2 cut(s)	406, 536
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	62, 608, 727, 746
HpyCH4III	ACNGT	2 cut(s)	127, 564
HpyCH4V	TGCA	5 cut(s)	38, 164, 280, 395, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 256
HpyF3I	CTNAG	1 cut(s)	449
Hsp92II	CATG	3 cut(s)	109, 202, 770
HspAI	GCGC	2 cut(s)	61, 85
KroI	GCCGGC	1 cut(s)	721
KroNI	GCCGGC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	361
KspI	CCGCGG	1 cut(s)	795
Kzo9I	GATC	3 cut(s)	319, 361, 372
LguI	GCTCTTC	1 cut(s)	94
Lsp1109I	GCAGC	3 cut(s)	176, 457, 712
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	321, 363, 374
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	3 cut(s)	319, 361, 372
MboII	GAAGA	3 cut(s)	81, 84, 623
MfeI	CAATTG	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	4 cut(s)	275, 332, 676, 746
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	712
MmeI	TCCRAC	3 cut(s)	271, 323, 618
Mox20I	TGGCCA	1 cut(s)	383
Mph1103I	ATGCAT	1 cut(s)	40
MroNI	GCCGGC	1 cut(s)	721
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	4 cut(s)	426, 606, 711, 828
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	2 cut(s)	722, 729
MspR9I	CCNGG	1 cut(s)	730
MunI	CAATTG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	2 cut(s)	173, 256
NaeI	GCCGGC	1 cut(s)	723
NciI	CCSGG	1 cut(s)	730
NdeII	GATC	3 cut(s)	319, 361, 372
NgoMIV	GCCGGC	1 cut(s)	721
NlaIII	CATG	3 cut(s)	109, 202, 770
NmeAIII	GCCGAG	2 cut(s)	186, 192
NmuCI	GTSAC	1 cut(s)	514
NsbI	TGCGCA	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	743
PciSI	GCTCTTC	1 cut(s)	94
PdiI	GCCGGC	1 cut(s)	723
PkrI	GCNGC	5 cut(s)	166, 197, 232, 472, 727
PleI	GAGTC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	711
PshAI	GACNNNNGTC	1 cut(s)	794
Psp124BI	GAGCTC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	102, 202, 719
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	261
SacII	CCGCGG	1 cut(s)	795
SalI	GTCGAC	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	4 cut(s)	426, 606, 711, 828
SatI	GCNGC	5 cut(s)	165, 196, 231, 471, 726
Sau3AI	GATC	3 cut(s)	319, 361, 372
Sau96I	GGNCC	3 cut(s)	102, 202, 719
SchI	GAGTC	1 cut(s)	712
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	47
Sfr303I	CCGCGG	1 cut(s)	795
SfuI	TTCGAA	1 cut(s)	743
SgrBI	CCGCGG	1 cut(s)	795
SinI	GGWCC	1 cut(s)	202
SmlI	CTYRAG	2 cut(s)	141, 152
SmoI	CTYRAG	2 cut(s)	141, 152
Sse9I	AATT	4 cut(s)	275, 332, 676, 746
SsiI	CCGC	5 cut(s)	195, 231, 497, 792, 794
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	127, 564
TaqI	TCGA	5 cut(s)	180, 357, 375, 405, 743
TasI	AATT	4 cut(s)	275, 332, 676, 746
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	2 cut(s)	198, 233
Tru1I	TTAA	4 cut(s)	426, 606, 711, 828
Tru9I	TTAA	4 cut(s)	426, 606, 711, 828
TscAI	CASTG	3 cut(s)	130, 223, 670
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	164, 470, 725
Tsp45I	GTSAC	1 cut(s)	514
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	3 cut(s)	130, 223, 670
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	405
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.