Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

21335449 .. 21336297

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTTCCTCCTCCCTATCCCTCCTCTCCCCCCACAATGCCTCAACCGCCACCCACCTTTTCCTGCGCACCCCCAAATCCCCTAACATGCGCTCGCCTTCTTCCTACAGAGCCATGTCCGTCAAAGCCCGCACGGTCCCCGCCCTCACTCAAGACGACCTCAAGAAGCTAGCCGCCGACAAGGCCGTCGAGTACGTCAAATCAGGTATGGTCCTCGGCCTCGGAACCGGCTCCACTGCCGCCTTCGTGGTCTCCAAGCTCGGGGAGCTTCTCAAATCCGGCGAATTGAAGGACATCGTCGGAGTCCCGACTTCCAAGCGCACGGAGGACCAAGCTCGCCAGTTGGGTATTCCCCTTTCGGTGCTCGACGACCACCCGAAGATCGATTTGGCGATCGACGGCGCCGATGAGGTCGACCCAAATCTCGATTTGGTCAAAGGGCGCGGCGGAGCTTTGCTGAGGGAGAAGATGGTGGAGGCGGCGTCGGAGAAGTTTGTGGTGGTGGCGGATGAGACGAAGCTGGTGACTGGGCTCGGCGGAAGCGGGCTGGCAATGCCGGTGGAGGTGGTGCAGTTCTGCTGGAAGTACAACTTGGTGAGGCTTCAGGAGCTGTTTAAGGAAGAAGGGGTGGAGGCAAAATTGAGGATCGACGGCGACGGGAAGCCTTATGTGACTGATAACTTCAATTACATTGTGGATTTGTACTTCCAGACTCCGATTAAAGACGGGCCGGCGGCAGGAAAGGAGATTTTGAAATTTGAAGGGGTTGTGGAACATGGGTTGTTCTTGGACATGGCGACGGCGGTGATCATAGCCGGCACGGATGGAGTGGATGTGAAGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

283

Amino Acids

30.26

Weight (kDa)

5.69

Isoelectric Point (pI)

25.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	100 - 276	1.3e-60	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
Acc16I	TGCGCA	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	1 cut(s)	444
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	755
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	2 cut(s)	402, 482
AfaI	GTAC	3 cut(s)	194, 587, 704
AfiI	CCNNNNNNNGG	2 cut(s)	261, 737
AgsI	TTSAA	4 cut(s)	289, 685, 754, 761
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 575, 607
AluBI	AGCT	7 cut(s)	169, 259, 268, 335, 452, 520, 610
AluI	AGCT	7 cut(s)	169, 259, 268, 335, 452, 520, 610
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	2 cut(s)	256, 506
AlwI	GGATC	1 cut(s)	653
AlwNI	CAGNNNCTG	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	183, 217, 728
ApoI	RAATTY	1 cut(s)	755
AspLEI	GCGC	5 cut(s)	69, 93, 321, 404, 444
AspS9I	GGNCC	4 cut(s)	136, 211, 328, 728
AsuHPI	GGTGA	3 cut(s)	535, 607, 817
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	136, 211, 328
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	458
BccI	CCATC	2 cut(s)	463, 818
BceAI	ACGGC	4 cut(s)	170, 415, 667, 816
BclI	TGATCA	1 cut(s)	807
BcoDI	GTCTC	2 cut(s)	256, 506
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	405
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	5 cut(s)	174, 240, 445, 480, 735
BlsI	GCNGC	5 cut(s)	175, 241, 446, 481, 736
Bme18I	GGWCC	3 cut(s)	136, 211, 328
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	4 cut(s)	136, 211, 328, 728
BmiI	GGNNCC	4 cut(s)	138, 226, 232, 403
BmrI	ACTGGG	1 cut(s)	537
BmtI	GCTAGC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	845
Bpu10I	CCTNAGC	1 cut(s)	458
BpuEI	CTTGAG	2 cut(s)	135, 146
Bsa29I	ATCGAT	1 cut(s)	384
BsaHI	GRCGYC	2 cut(s)	402, 482
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	214, 220
BsaXI	ACNNNNNCTCC	4 cut(s)	467, 497, 819, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 737
Bse118I	RCCGGY	4 cut(s)	227, 556, 730, 815
Bse1I	ACTGG	2 cut(s)	340, 532
Bse3DI	GCAATG	1 cut(s)	558
BseCI	ATCGAT	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	214, 220
BseGI	GGATG	3 cut(s)	514, 829, 838
BseLI	CCNNNNNNNGG	2 cut(s)	261, 737
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	340, 532
BseRI	GAGGAG	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	3 cut(s)	185, 219, 730
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	5 cut(s)	228, 279, 557, 731, 816
BslFI	GGGAC	2 cut(s)	122, 290
BslI	CCNNNNNNNGG	2 cut(s)	261, 737
BsmAI	GTCTC	2 cut(s)	256, 506
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	2 cut(s)	122, 290
BsnI	GGCC	3 cut(s)	185, 219, 730
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	366, 534
Bsp143I	GATC	4 cut(s)	381, 393, 645, 807
BspANI	GGCC	3 cut(s)	185, 219, 730
BspCNI	CTCAG	1 cut(s)	450
BspDI	ATCGAT	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	4 cut(s)	138, 226, 232, 403
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	4 cut(s)	227, 556, 730, 815
BsrI	ACTGG	2 cut(s)	340, 532
BssAI	RCCGGY	4 cut(s)	227, 556, 730, 815
BssECI	CCNNGG	2 cut(s)	214, 220
BssMI	GATC	4 cut(s)	381, 393, 645, 807
BssNI	GRCGYC	2 cut(s)	402, 482
Bst4CI	ACNGT	1 cut(s)	136
BstACI	GRCGYC	2 cut(s)	402, 482
BstC8I	GCNNGC	8 cut(s)	95, 130, 171, 337, 545, 549, 732, 817
BstDEI	CTNAG	1 cut(s)	458
BstF5I	GGATG	3 cut(s)	514, 829, 838
BstFNI	CGCG	1 cut(s)	444
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	5 cut(s)	69, 93, 321, 404, 444
BstKTI	GATC	4 cut(s)	384, 396, 648, 810
BstMAI	GTCTC	2 cut(s)	256, 506
BstMBI	GATC	4 cut(s)	381, 393, 645, 807
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 182, 265, 553, 607
BstNSI	RCATGY	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	444
BstV2I	GAAGAC	1 cut(s)	845
Bsu15I	ATCGAT	1 cut(s)	384
BsuRI	GGCC	3 cut(s)	185, 219, 730
BsuTUI	ATCGAT	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	514, 829, 838
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	8 cut(s)	95, 130, 171, 337, 545, 549, 732, 817
CaiI	CAGNNNCTG	1 cut(s)	610
CfoI	GCGC	5 cut(s)	69, 93, 321, 404, 444
Cfr10I	RCCGGY	4 cut(s)	227, 556, 730, 815
Cfr13I	GGNCC	4 cut(s)	136, 211, 328, 728
ClaI	ATCGAT	1 cut(s)	384
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	3 cut(s)	193, 586, 703
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	4 cut(s)	88, 115, 776, 793
CviQI	GTAC	3 cut(s)	193, 586, 703
DdeI	CTNAG	1 cut(s)	458
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	4 cut(s)	383, 395, 647, 809
DpnII	GATC	4 cut(s)	381, 393, 645, 807
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EciI	GGCGGA	3 cut(s)	462, 521, 552
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	136, 211, 328
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	4 cut(s)	91, 118, 779, 796
FaiI	YATR	7 cut(s)	89, 116, 209, 669, 777, 794, 812
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	122, 290
FatI	CATG	4 cut(s)	87, 114, 775, 792
FauI	CCCGC	3 cut(s)	137, 148, 536
FbaI	TGATCA	1 cut(s)	807
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	5 cut(s)	174, 240, 445, 480, 735
FokI	GGATG	3 cut(s)	521, 836, 845
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	5 cut(s)	174, 240, 445, 480, 735
FspBI	CTAG	1 cut(s)	170
FspI	TGCGCA	1 cut(s)	68
GlaI	GCGC	5 cut(s)	68, 92, 320, 403, 443
GluI	GCNGC	5 cut(s)	174, 240, 445, 480, 735
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	185, 219, 730
HapII	CCGG	5 cut(s)	228, 279, 557, 731, 816
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	5 cut(s)	69, 93, 321, 404, 444
Hin1I	GRCGYC	2 cut(s)	402, 482
Hin1II	CATG	4 cut(s)	91, 118, 779, 796
Hin6I	GCGC	5 cut(s)	67, 91, 319, 402, 442
HinP1I	GCGC	5 cut(s)	67, 91, 319, 402, 442
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	303, 712
HpaII	CCGG	5 cut(s)	228, 279, 557, 731, 816
HphI	GGTGA	3 cut(s)	535, 607, 817
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	4 cut(s)	224, 302, 487, 717
Hpy188III	TCNNGA	6 cut(s)	152, 163, 307, 425, 605, 709
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	8 cut(s)	191, 302, 371, 401, 487, 653, 659, 802
HpyAV	CCTTC	5 cut(s)	108, 253, 283, 617, 755
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	571
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 182, 265, 553, 607
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	402, 482
Hsp92II	CATG	4 cut(s)	91, 118, 779, 796
HspAI	GCGC	5 cut(s)	67, 91, 319, 402, 442
KasI	GGCGCC	1 cut(s)	401
KroI	GCCGGC	2 cut(s)	730, 815
KroNI	GCCGGC	2 cut(s)	732, 817
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	4 cut(s)	381, 393, 645, 807
LmnI	GCTCC	4 cut(s)	236, 265, 449, 607
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	523, 670
MalI	GATC	4 cut(s)	383, 395, 647, 809
MboI	GATC	4 cut(s)	381, 393, 645, 807
MboII	GAAGA	4 cut(s)	93, 391, 478, 632
MhlI	GDGCHC	2 cut(s)	366, 534
MluCI	AATT	4 cut(s)	284, 638, 685, 755
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	2 cut(s)	312, 706
MmeI	TCCRAC	2 cut(s)	280, 465
MroNI	GCCGGC	2 cut(s)	730, 815
MseI	TTAA	2 cut(s)	615, 720
MspI	CCGG	5 cut(s)	228, 279, 557, 731, 816
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	5 cut(s)	47, 182, 265, 553, 607
NaeI	GCCGGC	2 cut(s)	732, 817
NarI	GGCGCC	1 cut(s)	402
NdeII	GATC	4 cut(s)	381, 393, 645, 807
NgoMIV	GCCGGC	2 cut(s)	730, 815
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	4 cut(s)	91, 118, 779, 796
NlaIV	GGNNCC	4 cut(s)	138, 226, 232, 403
NmeAIII	GCCGAG	2 cut(s)	195, 513
NmuCI	GTSAC	2 cut(s)	523, 670
NsbI	TGCGCA	1 cut(s)	68
NspI	RCATGY	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PdiI	GCCGGC	2 cut(s)	732, 817
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	5 cut(s)	175, 241, 446, 481, 736
Ple19I	CGATCG	1 cut(s)	396
PleI	GAGTC	2 cut(s)	311, 706
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	2 cut(s)	311, 706
PspN4I	GGNNCC	4 cut(s)	138, 226, 232, 403
PspPI	GGNCC	4 cut(s)	136, 211, 328, 728
PstNI	CAGNNNCTG	1 cut(s)	610
PsyI	GACNNNGTC	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	396
RsaI	GTAC	3 cut(s)	194, 587, 704
RsaNI	GTAC	3 cut(s)	193, 586, 703
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	615, 720
SatI	GCNGC	5 cut(s)	174, 240, 445, 480, 735
Sau3AI	GATC	4 cut(s)	381, 393, 645, 807
Sau96I	GGNCC	4 cut(s)	136, 211, 328, 728
SchI	GAGTC	2 cut(s)	312, 706
SduI	GDGCHC	2 cut(s)	366, 534
SfcI	CTRYAG	1 cut(s)	106
SfoI	GGCGCC	1 cut(s)	403
SinI	GGWCC	3 cut(s)	136, 211, 328
SmlI	CTYRAG	2 cut(s)	150, 161
SmoI	CTYRAG	2 cut(s)	150, 161
Sse9I	AATT	4 cut(s)	284, 638, 685, 755
SspDI	GGCGCC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	7 cut(s)	189, 366, 384, 396, 414, 426, 648
TasI	AATT	4 cut(s)	284, 638, 685, 755
TatI	WGTACW	2 cut(s)	585, 702
TauI	GCSGC	5 cut(s)	176, 242, 447, 482, 737
Tru1I	TTAA	2 cut(s)	615, 720
Tru9I	TTAA	2 cut(s)	615, 720
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	523, 670
Tsp45I	GTSAC	2 cut(s)	523, 670
TspGWI	ACGGA	3 cut(s)	109, 338, 836
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	3 cut(s)	136, 211, 328
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.