MD04G1222500.v1.1

Ribose-5-phosphate isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
30329053 .. 30330957
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1222500.v1.1.491

Sequence Viewer

Length: 849 bp
ATGGCTTCCTCCGCCATATCCCTCCTCTCCCCCCACAAAGCCTCCACCGCCACCCACCTTTTCCTGCGCACCCCCAAATCCCCTAACATGCGCTCACCTTCTTCCTACAGGCCCATGTCCGTCAAAGCCCGCACAGTCCCTGCCCTCACTCAAGACGACCTCAAGAAGCTAGCCGCCGACAAGGCCGTTGAGTACGTCAAATCCGGTATGGTCCTTGGCCTCGGAACTGGCTCCACTGCCGCCTTCGTGGTCTCCAAGCTCGGGGAGCTTCTCAAATCCGGCGAATTGAAGGACATCGTCGGAGTCCCGACTTCCAAGCGCACGGAGGACCAAGCTCGCCAGTTGGGTATTCCCCTTTCGGTGCTCGACGACCACCCGAAGATCGATTTGGCGATCGATGGCGCCGATGAGGTCGACCCAAATCTTGATTTGGTCAAAGGGCGCGGCGGAGCTTTGCTGAGGGAGAAGATGGTGGAGGCGGCGTCGGAGAAGTTTGTGGTGGTGGCGGATGAGACGAAGCTAGTGACTGGGCTCGGCGGAAGCGGGCTGGCAATGCCCGTGGAGGTGGTGCAGTTCTGCTGGAAGTACAACTTGGTGAGGCTTCAGGAGCTGTTTAAGGAAGAAGGGGTGGAGGCGAAATTGAGGATCGACGGCGACGGGAAGCCGTATGTGACTGATAACTTCAATTACATTGTGGATTTGTACTTCCAGACTCCGATTAAAGACGGGCCGGCGGCAGGGAAGGAGATTTTGAAATTCGAAGGAGTTGTGGAACATGGGTTGTTCTTAGACATGGCGACGGCGGTGATCATTGCGGGTACGGATGGAGTGGATGTGAAGACCAAGTGA

Protein Analysis

283

Amino Acids

30.28

Weight (kDa)

5.9

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 100 - 276 1.3e-60 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 444
AclWI GGATC 1 cut(s) 653
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 587
AcyI GRCGYC 2 cut(s) 402, 482
AfaI GTAC 4 cut(s) 194, 587, 704, 820
AfiI CCNNNNNNNGG 2 cut(s) 261, 737
AgsI TTSAA 3 cut(s) 289, 685, 754
AjuI GAANNNNNNNTTGG 4 cut(s) 371, 403, 575, 607
AluBI AGCT 7 cut(s) 169, 259, 268, 335, 452, 520, 610
AluI AGCT 7 cut(s) 169, 259, 268, 335, 452, 520, 610
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 256, 506
AlwI GGATC 1 cut(s) 653
AlwNI CAGNNNCTG 2 cut(s) 140, 610
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 4 cut(s) 110, 183, 217, 728
ApoI RAATTY 1 cut(s) 755
AspLEI GCGC 5 cut(s) 69, 93, 321, 404, 444
AspS9I GGNCC 4 cut(s) 111, 211, 328, 728
AsuHPI GGTGA 3 cut(s) 87, 607, 817
AsuII TTCGAA 1 cut(s) 759
AsuNHI GCTAGC 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 2 cut(s) 211, 328
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 366
BbvCI CCTCAGC 1 cut(s) 458
BccI CCATC 3 cut(s) 392, 463, 818
BceAI ACGGC 4 cut(s) 170, 649, 667, 816
BclI TGATCA 1 cut(s) 807
BcoDI GTCTC 2 cut(s) 256, 506
BfaI CTAG 2 cut(s) 170, 521
BfmI CTRYAG 1 cut(s) 106
BfoI RGCGCY 1 cut(s) 405
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 5 cut(s) 174, 240, 445, 480, 735
BlsI GCNGC 5 cut(s) 175, 241, 446, 481, 736
Bme18I GGWCC 2 cut(s) 211, 328
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 4 cut(s) 111, 211, 328, 728
BmiI GGNNCC 2 cut(s) 232, 403
BmrI ACTGGG 1 cut(s) 537
BmtI GCTAGC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 845
Bpu10I CCTNAGC 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 759
BpuEI CTTGAG 2 cut(s) 135, 146
Bsa29I ATCGAT 2 cut(s) 384, 396
BsaHI GRCGYC 2 cut(s) 402, 482
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 214, 220, 558
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 467, 497, 819, 849
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 737
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 3 cut(s) 232, 340, 532
Bse3DI GCAATG 2 cut(s) 558, 810
BseCI ATCGAT 2 cut(s) 384, 396
BseDI CCNNGG 3 cut(s) 214, 220, 558
BseGI GGATG 3 cut(s) 514, 829, 838
BseLI CCNNNNNNNGG 2 cut(s) 261, 737
BseMI GCAATG 2 cut(s) 558, 810
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 3 cut(s) 232, 340, 532
BseRI GAGGAG 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 444
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 4 cut(s) 112, 185, 219, 730
BshNI GGYRCC 1 cut(s) 401
BshVI ATCGAT 2 cut(s) 384, 396
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 3 cut(s) 204, 279, 731
BslFI GGGAC 2 cut(s) 122, 290
BslI CCNNNNNNNGG 2 cut(s) 261, 737
BsmAI GTCTC 2 cut(s) 256, 506
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 2 cut(s) 122, 290
BsnI GGCC 4 cut(s) 112, 185, 219, 730
Bso31I GGTCTC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 759
Bsp1286I GDGCHC 2 cut(s) 366, 534
Bsp143I GATC 4 cut(s) 381, 393, 645, 807
BspANI GGCC 4 cut(s) 112, 185, 219, 730
BspCNI CTCAG 1 cut(s) 450
BspDI ATCGAT 2 cut(s) 384, 396
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 232, 403
BspOI GCTAGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 653
BspT104I TTCGAA 1 cut(s) 759
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 256
BsrDI GCAATG 2 cut(s) 558, 810
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 3 cut(s) 232, 340, 532
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 214, 220, 558
BssMI GATC 4 cut(s) 381, 393, 645, 807
BssNI GRCGYC 2 cut(s) 402, 482
BssT1I CCWWGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 136
BstACI GRCGYC 2 cut(s) 402, 482
BstBI TTCGAA 1 cut(s) 759
BstC8I GCNNGC 6 cut(s) 130, 171, 337, 545, 549, 732
BstDEI CTNAG 2 cut(s) 458, 787
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 3 cut(s) 514, 829, 838
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 5 cut(s) 69, 93, 321, 404, 444
BstKTI GATC 4 cut(s) 384, 396, 648, 810
BstMAI GTCTC 2 cut(s) 256, 506
BstMBI GATC 4 cut(s) 381, 393, 645, 807
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 6 cut(s) 11, 47, 182, 265, 553, 607
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 106
BstUI CGCG 1 cut(s) 444
BstV2I GAAGAC 1 cut(s) 845
Bsu15I ATCGAT 2 cut(s) 384, 396
BsuRI GGCC 4 cut(s) 112, 185, 219, 730
BsuTUI ATCGAT 2 cut(s) 384, 396
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 3 cut(s) 514, 829, 838
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 6 cut(s) 130, 171, 337, 545, 549, 732
CaiI CAGNNNCTG 2 cut(s) 140, 610
CfoI GCGC 5 cut(s) 69, 93, 321, 404, 444
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 4 cut(s) 111, 211, 328, 728
ClaI ATCGAT 2 cut(s) 384, 396
CseI GACGC 1 cut(s) 471
Csp6I GTAC 4 cut(s) 193, 586, 703, 819
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 4 cut(s) 88, 115, 776, 793
CviQI GTAC 4 cut(s) 193, 586, 703, 819
DdeI CTNAG 2 cut(s) 458, 787
DinI GGCGCC 1 cut(s) 403
DpnI GATC 4 cut(s) 383, 395, 647, 809
DpnII GATC 4 cut(s) 381, 393, 645, 807
EciI GGCGGA 3 cut(s) 462, 521, 552
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 211, 328
Eco57I CTGAAG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 534
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 4 cut(s) 91, 118, 779, 796
FaiI YATR 7 cut(s) 17, 89, 116, 209, 669, 777, 794
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 2 cut(s) 122, 290
FatI CATG 4 cut(s) 87, 114, 775, 792
FauI CCCGC 3 cut(s) 137, 536, 808
FbaI TGATCA 1 cut(s) 807
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 5 cut(s) 174, 240, 445, 480, 735
FokI GGATG 3 cut(s) 521, 836, 845
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 5 cut(s) 174, 240, 445, 480, 735
FspBI CTAG 2 cut(s) 170, 521
FspI TGCGCA 1 cut(s) 68
GlaI GCGC 5 cut(s) 68, 92, 320, 403, 443
GluI GCNGC 5 cut(s) 174, 240, 445, 480, 735
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 4 cut(s) 112, 185, 219, 730
HapII CCGG 3 cut(s) 204, 279, 731
HgaI GACGC 1 cut(s) 471
HhaI GCGC 5 cut(s) 69, 93, 321, 404, 444
Hin1I GRCGYC 2 cut(s) 402, 482
Hin1II CATG 4 cut(s) 91, 118, 779, 796
Hin6I GCGC 5 cut(s) 67, 91, 319, 402, 442
HinP1I GCGC 5 cut(s) 67, 91, 319, 402, 442
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 303, 712
HpaII CCGG 3 cut(s) 204, 279, 731
HphI GGTGA 3 cut(s) 87, 607, 817
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 4 cut(s) 224, 302, 487, 717
Hpy188III TCNNGA 6 cut(s) 152, 163, 307, 425, 605, 709
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 6 cut(s) 302, 371, 487, 653, 659, 802
HpyAV CCTTC 6 cut(s) 108, 253, 283, 617, 736, 755
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 571
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 47, 182, 265, 553, 607
HpyF3I CTNAG 2 cut(s) 458, 787
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 2 cut(s) 402, 482
Hsp92II CATG 4 cut(s) 91, 118, 779, 796
HspAI GCGC 5 cut(s) 67, 91, 319, 402, 442
KasI GGCGCC 1 cut(s) 401
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 4 cut(s) 381, 393, 645, 807
LmnI GCTCC 4 cut(s) 236, 265, 449, 607
MaeI CTAG 2 cut(s) 170, 521
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 523, 670
MalI GATC 4 cut(s) 383, 395, 647, 809
MboI GATC 4 cut(s) 381, 393, 645, 807
MboII GAAGA 4 cut(s) 93, 391, 478, 632
MhlI GDGCHC 2 cut(s) 366, 534
MluCI AATT 4 cut(s) 284, 638, 685, 755
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 2 cut(s) 312, 706
MmeI TCCRAC 2 cut(s) 280, 465
MroNI GCCGGC 1 cut(s) 730
MseI TTAA 2 cut(s) 615, 720
MspI CCGG 3 cut(s) 204, 279, 731
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 6 cut(s) 11, 47, 182, 265, 553, 607
NaeI GCCGGC 1 cut(s) 732
NarI GGCGCC 1 cut(s) 402
NdeII GATC 4 cut(s) 381, 393, 645, 807
NgoMIV GCCGGC 1 cut(s) 730
NheI GCTAGC 1 cut(s) 169
NlaIII CATG 4 cut(s) 91, 118, 779, 796
NlaIV GGNNCC 2 cut(s) 232, 403
NmeAIII GCCGAG 1 cut(s) 513
NmuCI GTSAC 2 cut(s) 523, 670
NsbI TGCGCA 1 cut(s) 68
NspI RCATGY 1 cut(s) 91
NspV TTCGAA 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdiI GCCGGC 1 cut(s) 732
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 5 cut(s) 175, 241, 446, 481, 736
Ple19I CGATCG 1 cut(s) 396
PleI GAGTC 2 cut(s) 311, 706
PluTI GGCGCC 1 cut(s) 405
PpsI GAGTC 2 cut(s) 311, 706
PspN4I GGNNCC 2 cut(s) 232, 403
PspPI GGNCC 4 cut(s) 111, 211, 328, 728
PstNI CAGNNNCTG 2 cut(s) 140, 610
PsyI GACNNNGTC 1 cut(s) 296
PvuI CGATCG 1 cut(s) 396
RsaI GTAC 4 cut(s) 194, 587, 704, 820
RsaNI GTAC 4 cut(s) 193, 586, 703, 819
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 2 cut(s) 615, 720
SatI GCNGC 5 cut(s) 174, 240, 445, 480, 735
Sau3AI GATC 4 cut(s) 381, 393, 645, 807
Sau96I GGNCC 4 cut(s) 111, 211, 328, 728
SchI GAGTC 2 cut(s) 312, 706
SduI GDGCHC 2 cut(s) 366, 534
SfcI CTRYAG 1 cut(s) 106
SfoI GGCGCC 1 cut(s) 403
SfuI TTCGAA 1 cut(s) 759
SinI GGWCC 2 cut(s) 211, 328
SmlI CTYRAG 2 cut(s) 150, 161
SmoI CTYRAG 2 cut(s) 150, 161
Sse9I AATT 4 cut(s) 284, 638, 685, 755
SspDI GGCGCC 1 cut(s) 401
SspMI CTAG 2 cut(s) 170, 521
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 198
TaqI TCGA 6 cut(s) 366, 384, 396, 414, 648, 759
TasI AATT 4 cut(s) 284, 638, 685, 755
TatI WGTACW 2 cut(s) 585, 702
TauI GCSGC 5 cut(s) 176, 242, 447, 482, 737
Tru1I TTAA 2 cut(s) 615, 720
Tru9I TTAA 2 cut(s) 615, 720
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 523, 670
Tsp45I GTSAC 2 cut(s) 523, 670
TspGWI ACGGA 3 cut(s) 109, 338, 836
TspRI CASTG 1 cut(s) 241
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 211, 328
XapI RAATTY 1 cut(s) 755
XceI RCATGY 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 2 cut(s) 170, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.