Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

47415847 .. 47416671

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025661

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTTCCTCCCTATCCCTCCTCTCCCCCCACACCCTTATCCTCCGCACCCCCAAAACCCTTAACCTGCGCACCCCCTCCCACCGCCGCCCCATGTGCATCAAAGCCCGCACCGTCCCCGCCCTCACCCAAGACGACCTCAAGAAGCTCGCCGCCGACAAGGCCGTCGAGTACGTCAAGTCCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTCGTCTCCAAGCTCGGCGAGCTCATCAAATCCGGCGAGTTGACCGACATCGTCGGAGTCCCGACCTCGAAACGAACCGAGGACCAAGCCAGGAGCATCGGCATCCCTCTCTCGATCCTCGACGACCACCCGAAAATCGATCTCGCCATCGACGGCGCAGACGAGGTCGACCCCAACCTGGATTTGGTCAAGGGCCGCGGCGGCGCGTTGTTGAGGGAGAAGATGGTGGAGGCGGCGTCGGAGAAGTTCGTGGTGGTCGCCGACGAGACGAAGCTGGTGACGGGGCTGGGAGGGAGCGGGCTGGCAATGCCGGTGGAGGTGGTTCAGTTTTGTTGGAAATATAATCTCATTAGGCTTCAAGAGCTGTTCAAAGAAGAAGGGGTCGAGGCCAAGCTGAGATTGGAGGGTGACAAGCCCTATGTGACCGATAATTACAACTACATTGTGGATTTGTATTTCAAGAGTCCTATTAAAGATGGGCCGGCCGCCGGGAAGGAGATTTCGGTGCTGGAAGGAGTGGTGGAACATGGGTTGTTCTTGAACATGGCGACCGCGGTGATCATTGCCGGGAAGGAGGGAGTGGATGTGCAGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

275

Amino Acids

29.55

Weight (kDa)

5.9

Isoelectric Point (pI)

25.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	93 - 268	2.2e-60	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc16I	TGCGCA	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	522
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	3 cut(s)	423, 431, 779
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	403, 409, 713
AgsI	TTSAA	4 cut(s)	584, 595, 685, 766
AjnI	CCWGG	2 cut(s)	314, 402
AluBI	AGCT	6 cut(s)	148, 238, 247, 499, 589, 619
AluI	AGCT	6 cut(s)	148, 238, 247, 499, 589, 619
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	2 cut(s)	235, 485
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	6 cut(s)	162, 196, 418, 612, 704, 708
AspLEI	GCGC	3 cut(s)	72, 383, 431
AspS9I	GGNCC	4 cut(s)	190, 307, 418, 704
AsuC2I	CCSGG	2 cut(s)	715, 793
AsuHPI	GGTGA	4 cut(s)	118, 514, 644, 793
AvaII	GGWCC	2 cut(s)	190, 307
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BccI	CCATC	3 cut(s)	380, 442, 695
BceAI	ACGGC	2 cut(s)	149, 394
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	316, 404
BclI	TGATCA	1 cut(s)	783
BcnI	CCSGG	2 cut(s)	715, 793
BcoDI	GTCTC	2 cut(s)	235, 485
BfuAI	ACCTGC	1 cut(s)	75
BglI	GCCNNNNNGGC	2 cut(s)	161, 426
BisI	GCNGC	8 cut(s)	88, 153, 219, 421, 424, 427, 459, 711
BlsI	GCNGC	8 cut(s)	89, 154, 220, 422, 425, 428, 460, 712
Bme1390I	CCNGG	4 cut(s)	316, 404, 715, 793
Bme18I	GGWCC	2 cut(s)	190, 307
BmgT120I	GGNCC	4 cut(s)	190, 307, 418, 704
BmiI	GGNNCC	2 cut(s)	205, 211
BmrFI	CCNGG	4 cut(s)	316, 404, 715, 793
BmsI	GCATC	3 cut(s)	108, 330, 336
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	715, 793
Bsa29I	ATCGAT	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	5 cut(s)	193, 199, 303, 421, 777
BsaXI	ACNNNNNCTCC	4 cut(s)	446, 476, 795, 825
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 409, 713
Bse118I	RCCGGY	3 cut(s)	206, 535, 706
Bse3DI	GCAATG	2 cut(s)	537, 786
BseBI	CCWGG	2 cut(s)	316, 404
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	5 cut(s)	193, 199, 303, 421, 777
BseGI	GGATG	2 cut(s)	327, 814
BseLI	CCNNNNNNNGG	3 cut(s)	403, 409, 713
BseMI	GCAATG	2 cut(s)	537, 786
BseMII	CTCAG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	11
BseX3I	CGGCCG	1 cut(s)	708
BseYI	CCCAGC	1 cut(s)	511
Bsh1236I	CGCG	3 cut(s)	423, 431, 779
Bsh1285I	CGRYCG	2 cut(s)	711, 777
BshFI	GGCC	6 cut(s)	164, 198, 420, 614, 706, 710
BshNI	GGYRCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	363
BsiEI	CGRYCG	2 cut(s)	711, 777
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	7 cut(s)	183, 207, 258, 536, 707, 714, 792
BslFI	GGGAC	2 cut(s)	101, 269
BslI	CCNNNNNNNGG	3 cut(s)	403, 409, 713
BsmAI	GTCTC	2 cut(s)	235, 485
BsmBI	CGTCTC	2 cut(s)	235, 485
BsmFI	GGGAC	2 cut(s)	101, 269
BsnI	GGCC	6 cut(s)	164, 198, 420, 614, 706, 710
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	339, 364, 783
BspANI	GGCC	6 cut(s)	164, 198, 420, 614, 706, 710
BspCNI	CTCAG	1 cut(s)	612
BspDI	ATCGAT	1 cut(s)	363
BspFNI	CGCG	3 cut(s)	423, 431, 779
BspLI	GGNNCC	2 cut(s)	205, 211
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	522
BsrDI	GCAATG	2 cut(s)	537, 786
BsrFI	RCCGGY	3 cut(s)	206, 535, 706
BssAI	RCCGGY	3 cut(s)	206, 535, 706
BssECI	CCNNGG	5 cut(s)	193, 199, 303, 421, 777
BssMI	GATC	3 cut(s)	339, 364, 783
BssNI	GRCGYC	1 cut(s)	461
Bst2UI	CCWGG	2 cut(s)	316, 404
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	461
BstC8I	GCNNGC	6 cut(s)	109, 150, 245, 524, 528, 708
BstDEI	CTNAG	1 cut(s)	620
BstDSI	CCRYGG	2 cut(s)	421, 777
BstF5I	GGATG	2 cut(s)	327, 814
BstFNI	CGCG	3 cut(s)	423, 431, 779
BstHHI	GCGC	3 cut(s)	72, 383, 431
BstKTI	GATC	3 cut(s)	342, 367, 786
BstMAI	GTCTC	2 cut(s)	235, 485
BstMBI	GATC	3 cut(s)	339, 364, 783
BstMCI	CGRYCG	2 cut(s)	711, 777
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 161, 244, 426, 532, 586
BstNI	CCWGG	2 cut(s)	316, 404
BstSCI	CCNGG	4 cut(s)	314, 402, 713, 791
BstUI	CGCG	3 cut(s)	423, 431, 779
BstZI	CGGCCG	1 cut(s)	708
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	6 cut(s)	164, 198, 420, 614, 706, 710
BsuTUI	ATCGAT	1 cut(s)	363
BtgI	CCRYGG	2 cut(s)	421, 777
BtsCI	GGATG	2 cut(s)	327, 814
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	6 cut(s)	109, 150, 245, 524, 528, 708
CfoI	GCGC	3 cut(s)	72, 383, 431
Cfr10I	RCCGGY	3 cut(s)	206, 535, 706
Cfr13I	GGNCC	4 cut(s)	190, 307, 418, 704
Cfr42I	CCGCGG	2 cut(s)	424, 780
ClaI	ATCGAT	1 cut(s)	363
CseI	GACGC	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviAII	CATG	4 cut(s)	94, 187, 752, 769
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	620
DpnI	GATC	3 cut(s)	341, 366, 785
DpnII	GATC	3 cut(s)	339, 364, 783
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	708
EagI	CGGCCG	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	190, 307
Eco52I	CGGCCG	1 cut(s)	708
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	314, 402
EcoT38I	GRGCYC	1 cut(s)	249
Esp3I	CGTCTC	2 cut(s)	235, 485
FaeI	CATG	4 cut(s)	97, 190, 755, 772
FaiI	YATR	6 cut(s)	95, 188, 567, 645, 753, 770
FaqI	GGGAC	2 cut(s)	101, 269
FatI	CATG	4 cut(s)	93, 186, 751, 768
FauI	CCCGC	3 cut(s)	116, 127, 515
FbaI	TGATCA	1 cut(s)	783
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	8 cut(s)	88, 153, 219, 421, 424, 427, 459, 711
FokI	GGATG	2 cut(s)	314, 821
FriOI	GRGCYC	1 cut(s)	249
FseI	GGCCGGCC	1 cut(s)	710
Fsp4HI	GCNGC	8 cut(s)	88, 153, 219, 421, 424, 427, 459, 711
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	3 cut(s)	71, 382, 430
GluI	GCNGC	8 cut(s)	88, 153, 219, 421, 424, 427, 459, 711
GsaI	CCCAGC	1 cut(s)	515
HaeIII	GGCC	6 cut(s)	164, 198, 420, 614, 706, 710
HapII	CCGG	7 cut(s)	183, 207, 258, 536, 707, 714, 792
HgaI	GACGC	1 cut(s)	450
HhaI	GCGC	3 cut(s)	72, 383, 431
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	97, 190, 755, 772
Hin6I	GCGC	3 cut(s)	70, 381, 429
HinP1I	GCGC	3 cut(s)	70, 381, 429
HincII	GTYRAC	2 cut(s)	267, 394
HindII	GTYRAC	2 cut(s)	267, 394
HinfI	GANTC	2 cut(s)	282, 688
HpaII	CCGG	7 cut(s)	183, 207, 258, 536, 707, 714, 792
HphI	GGTGA	4 cut(s)	118, 514, 644, 793
Hpy166II	GTNNAC	2 cut(s)	267, 394
Hpy188I	TCNGA	2 cut(s)	281, 466
Hpy188III	TCNNGA	6 cut(s)	142, 286, 337, 584, 685, 763
Hpy8I	GTNNAC	2 cut(s)	267, 394
Hpy99I	CGWCG	7 cut(s)	170, 230, 281, 350, 380, 466, 491
HpyAV	CCTTC	5 cut(s)	232, 596, 712, 731, 790
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	99, 814
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 161, 244, 426, 532, 586
HpyF3I	CTNAG	1 cut(s)	620
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	97, 190, 755, 772
HspAI	GCGC	3 cut(s)	70, 381, 429
KroI	GCCGGC	1 cut(s)	706
KroNI	GCCGGC	1 cut(s)	708
Ksp22I	TGATCA	1 cut(s)	783
KspI	CCGCGG	2 cut(s)	424, 780
Kzo9I	GATC	3 cut(s)	339, 364, 783
LmnI	GCTCC	3 cut(s)	215, 318, 519
LweI	GCATC	3 cut(s)	108, 330, 336
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	3 cut(s)	502, 632, 646
MalI	GATC	3 cut(s)	341, 366, 785
MbiI	CCGCTC	1 cut(s)	522
MboI	GATC	3 cut(s)	339, 364, 783
MboII	GAAGA	2 cut(s)	457, 611
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	655
MlyI	GAGTC	2 cut(s)	291, 697
MmeI	TCCRAC	3 cut(s)	259, 444, 539
MroNI	GCCGGC	1 cut(s)	706
MseI	TTAA	2 cut(s)	63, 696
MspA1I	CMGCKG	2 cut(s)	423, 779
MspI	CCGG	7 cut(s)	183, 207, 258, 536, 707, 714, 792
MspR9I	CCNGG	4 cut(s)	316, 404, 715, 793
MvaI	CCWGG	2 cut(s)	316, 404
MvnI	CGCG	3 cut(s)	423, 431, 779
MwoI	GCNNNNNNNGC	6 cut(s)	96, 161, 244, 426, 532, 586
NaeI	GCCGGC	1 cut(s)	708
NciI	CCSGG	2 cut(s)	715, 793
NdeII	GATC	3 cut(s)	339, 364, 783
NgoMIV	GCCGGC	1 cut(s)	706
NlaIII	CATG	4 cut(s)	97, 190, 755, 772
NlaIV	GGNNCC	2 cut(s)	205, 211
NmeAIII	GCCGAG	3 cut(s)	174, 180, 219
NmuCI	GTSAC	3 cut(s)	502, 632, 646
NsbI	TGCGCA	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	708
PflFI	GACNNNGTC	2 cut(s)	275, 389
PkrI	GCNGC	8 cut(s)	89, 154, 220, 422, 425, 428, 460, 712
PleI	GAGTC	2 cut(s)	290, 696
PpsI	GAGTC	2 cut(s)	290, 696
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	314, 402
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	314, 402
PspN4I	GGNNCC	2 cut(s)	205, 211
PspPI	GGNCC	4 cut(s)	190, 307, 418, 704
PsyI	GACNNNGTC	2 cut(s)	275, 389
RigI	GGCCGGCC	1 cut(s)	710
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	249
SacII	CCGCGG	2 cut(s)	424, 780
SalI	GTCGAC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	63, 696
SatI	GCNGC	8 cut(s)	88, 153, 219, 421, 424, 427, 459, 711
Sau3AI	GATC	3 cut(s)	339, 364, 783
Sau96I	GGNCC	4 cut(s)	190, 307, 418, 704
SchI	GAGTC	2 cut(s)	291, 697
ScrFI	CCNGG	4 cut(s)	316, 404, 715, 793
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	3 cut(s)	108, 330, 336
Sfr303I	CCGCGG	2 cut(s)	424, 780
SgrBI	CCGCGG	2 cut(s)	424, 780
SinI	GGWCC	2 cut(s)	190, 307
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	655
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	4 cut(s)	314, 402, 713, 791
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	8 cut(s)	168, 293, 338, 345, 363, 375, 393, 609
TaqII	GACCGA	2 cut(s)	284, 665
TasI	AATT	1 cut(s)	655
TauI	GCSGC	8 cut(s)	90, 155, 221, 423, 426, 429, 461, 713
Tru1I	TTAA	2 cut(s)	63, 696
Tru9I	TTAA	2 cut(s)	63, 696
TseFI	GTSAC	3 cut(s)	502, 632, 646
Tsp45I	GTSAC	3 cut(s)	502, 632, 646
Tth111I	GACNNNGTC	2 cut(s)	275, 389
VpaK11BI	GGWCC	2 cut(s)	190, 307
XcmI	CCANNNNNNNNNTGG	2 cut(s)	406, 622
XmiI	GTMKAC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.