Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003216.1

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

13384 .. 13816

Gene Structure 433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003216.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ctggccattgacgacgccgacgaggtcgaccccaatctagacttggtcaagggctgcagcggcgcgttgttaagagagaagatggtggaggtcgcgtcgaagaagttcgtggtggtcgccgaagggacgaaactgggtgaccgggctgggaggaagtggtttggcaatgggttgttcttgaatatggcgaccgcgatgatcattgcaaggaaggatggagtggatgtgcagaccaaagtggtgatatggataattgatagaggtttggaggtcggagagagtggaatcggagatgggaggtgggtggagatggaggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

106

Amino Acids

11.53

Weight (kDa)

4.77

Isoelectric Point (pI)

10.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	3 cut(s)	65, 95, 194
AciI	CCGC	2 cut(s)	60, 192
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	54, 57
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	149, 253
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	41, 69
BccI	CCATC	4 cut(s)	76, 209, 287, 304
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	143
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	55
BisI	GCNGC	3 cut(s)	55, 58, 61
BlsI	GCNGC	3 cut(s)	56, 59, 62
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BmrI	ACTGGG	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	15
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 210, 240
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	2 cut(s)	172, 201
BseGI	GGATG	2 cut(s)	220, 229
BseMI	GCAATG	2 cut(s)	172, 201
BseNI	ACTGG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	41, 69
BseYI	CCCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	3 cut(s)	65, 95, 194
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	2 cut(s)	60, 192
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	3 cut(s)	65, 95, 194
BspMAI	CTGCAG	1 cut(s)	59
BsrDI	GCAATG	2 cut(s)	172, 201
BsrI	ACTGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	220, 229
BstFNI	CGCG	3 cut(s)	65, 95, 194
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	55
BstUI	CGCG	3 cut(s)	65, 95, 194
BstV1I	GCAGC	2 cut(s)	41, 69
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	220, 229
CfoI	GCGC	1 cut(s)	65
CseI	GACGC	2 cut(s)	23, 84
CviJI	RGCY	3 cut(s)	5, 54, 146
CviKI_1	RGCY	3 cut(s)	5, 54, 146
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	3
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
FaiI	YATR	2 cut(s)	185, 247
FaqI	GGGAC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	55, 58, 61
FokI	GGATG	2 cut(s)	227, 236
Fsp4HI	GCNGC	3 cut(s)	55, 58, 61
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	3 cut(s)	55, 58, 61
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	2 cut(s)	23, 84
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	2 cut(s)	149, 253
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	275, 290
Hpy188III	TCNNGA	2 cut(s)	38, 178
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	3 cut(s)	17, 23, 100
HpyAV	CCTTC	2 cut(s)	116, 205
HpyCH4V	TGCA	3 cut(s)	57, 206, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	15
HspAI	GCGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	3 cut(s)	119, 132, 155
Lsp1109I	GCAGC	2 cut(s)	41, 69
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	91, 112
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	252
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	16, 82, 144, 254, 262, 291, 307
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	143
MvnI	CGCG	3 cut(s)	65, 95, 194
MwoI	GCNNNNNNNGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	285
PflFI	GACNNNGTC	2 cut(s)	23, 44
PkrI	GCNGC	3 cut(s)	56, 59, 62
PspEI	GGTNACC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	59
PsyI	GACNNNGTC	2 cut(s)	23, 44
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	3 cut(s)	55, 58, 61
Sau3AI	GATC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	5 cut(s)	27, 93, 265, 273, 302
SfcI	CTRYAG	1 cut(s)	55
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	2 cut(s)	60, 192
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	141
TaqI	TCGA	2 cut(s)	27, 98
TasI	AATT	1 cut(s)	252
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	54, 57
Tsp45I	GTSAC	1 cut(s)	137
Tth111I	GACNNNGTC	2 cut(s)	23, 44
XbaI	TCTAGA	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.