Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

47620814 .. 47621397

Gene Structure 584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATTGGCACTAGCCCAGCCACCAGTCCTTGCCATCTTGCTTCCTCCAATTCCAGCAACTCCTCTATCTCCACCCACCTCCTCTCCAGTTACCCTCAGATCAACCCATACTCAATCCCAAACCATCTCCTATTCGGTCATCAAAAGAAACCCATCTCCGATTCCACTCTCTCCGACCTCCAAACCCTCTTGGTCTCCAAGCTTGGCGAGCTCATAAAATACGACCACCCGAAAATCTATCTGGCCATCGACGGGGTCGATGAGGTCGACCCCAATCTGGATTTGGTTAAGGGCCGCAGCGGCGCGTTGTTAAAGGAGAAGATGGTGGAGGTTGCTTTGGAGAAGTTCGTGGTGGTCGCCGACGAGATGAAACTGGAGATAGGCTGGGAGGAAGCGGGTTGGCAATGGGTTGTTCTTGAATATGGTGACCGCGGTGATCATTGCAGGGAAGGATGGAGTGGACGCGCAGACCAAGTGATTGGCTTTTTTGGGATGGTGGTGGTGTGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

170

Amino Acids

18.85

Weight (kDa)

5.28

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	73 - 125	1.2e-15	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	3 cut(s)	305, 432, 465
AciI	CCGC	5 cut(s)	295, 300, 395, 430, 432
AcoI	YGGCCR	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	252, 277
AgsI	TTSAA	1 cut(s)	419
AluBI	AGCT	2 cut(s)	202, 211
AluI	AGCT	2 cut(s)	202, 211
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	243, 292
ApeKI	GCWGC	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	305, 467
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	437, 446
BalI	TGGCCA	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	7 cut(s)	42, 132, 161, 254, 316, 447, 487
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	295, 298, 301
BlsI	GCNGC	3 cut(s)	296, 299, 302
BmgT120I	GGNCC	1 cut(s)	292
BpmI	CTGGAG	2 cut(s)	70, 395
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 277
Bse1I	ACTGG	3 cut(s)	24, 87, 378
Bse3DI	GCAATG	2 cut(s)	410, 439
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	458, 498
BseLI	CCNNNNNNNGG	2 cut(s)	252, 277
BseMI	GCAATG	2 cut(s)	410, 439
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	3 cut(s)	24, 87, 378
BseRI	GAGGAG	2 cut(s)	52, 71
BseXI	GCAGC	1 cut(s)	309
BseYI	CCCAGC	2 cut(s)	16, 384
Bsh1236I	CGCG	3 cut(s)	305, 432, 465
BshFI	GGCC	2 cut(s)	245, 294
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	252, 277
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	245, 294
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	99, 436
BspACI	CCGC	5 cut(s)	295, 300, 395, 430, 432
BspANI	GGCC	2 cut(s)	245, 294
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	3 cut(s)	305, 432, 465
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	2 cut(s)	410, 439
BsrI	ACTGG	3 cut(s)	24, 87, 378
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	2 cut(s)	99, 436
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	430
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	2 cut(s)	458, 498
BstFNI	CGCG	3 cut(s)	305, 432, 465
BstHHI	GCGC	2 cut(s)	305, 467
BstKTI	GATC	2 cut(s)	102, 439
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	99, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 300
BstPI	GGTNACC	1 cut(s)	425
BstUI	CGCG	3 cut(s)	305, 432, 465
BstV1I	GCAGC	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	245, 294
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	458, 498
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	2 cut(s)	305, 467
Cfr13I	GGNCC	1 cut(s)	292
Cfr42I	CCGCGG	1 cut(s)	433
CseI	GACGC	1 cut(s)	471
CviJI	RGCY	8 cut(s)	15, 20, 202, 211, 245, 294, 384, 483
CviKI_1	RGCY	8 cut(s)	15, 20, 202, 211, 245, 294, 384, 483
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	101, 438
DpnII	GATC	2 cut(s)	99, 436
EaeI	YGGCCR	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	213
FaiI	YATR	3 cut(s)	109, 215, 423
FauI	CCCGC	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	295, 298, 301
FokI	GGATG	2 cut(s)	465, 505
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	3 cut(s)	295, 298, 301
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	2 cut(s)	304, 466
GluI	GCNGC	3 cut(s)	295, 298, 301
GsaI	CCCAGC	2 cut(s)	20, 388
GsuI	CTGGAG	2 cut(s)	70, 395
HaeIII	GGCC	2 cut(s)	245, 294
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	2 cut(s)	305, 467
Hin6I	GCGC	2 cut(s)	303, 465
HinP1I	GCGC	2 cut(s)	303, 465
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	2 cut(s)	437, 446
Hpy166II	GTNNAC	2 cut(s)	268, 461
Hpy188I	TCNGA	3 cut(s)	99, 160, 175
Hpy188III	TCNNGA	2 cut(s)	278, 416
Hpy8I	GTNNAC	2 cut(s)	268, 461
Hpy99I	CGWCG	2 cut(s)	254, 365
HpyAV	CCTTC	1 cut(s)	443
HpyCH4V	TGCA	1 cut(s)	444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 300
HpyF3I	CTNAG	1 cut(s)	96
HspAI	GCGC	2 cut(s)	303, 465
Ksp22I	TGATCA	1 cut(s)	436
KspI	CCGCGG	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	99, 436
LpnPI	CCDG	9 cut(s)	30, 37, 67, 100, 227, 263, 359, 370, 430
Lsp1109I	GCAGC	1 cut(s)	309
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	89, 425
MalI	GATC	2 cut(s)	101, 438
MboI	GATC	2 cut(s)	99, 436
MboII	GAAGA	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	1 cut(s)	49
MluNI	TGGCCA	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	2 cut(s)	288, 311
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	2 cut(s)	300, 432
MvnI	CGCG	3 cut(s)	305, 432, 465
MwoI	GCNNNNNNNGC	2 cut(s)	208, 300
NdeII	GATC	2 cut(s)	99, 436
NmuCI	GTSAC	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 264
PfeI	GAWTC	1 cut(s)	161
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	3 cut(s)	296, 299, 302
Psp124BI	GAGCTC	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	425
PspFI	CCCAGC	2 cut(s)	16, 384
PspPI	GGNCC	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	213
SacII	CCGCGG	1 cut(s)	433
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	288, 311
SatI	GCNGC	3 cut(s)	295, 298, 301
Sau3AI	GATC	2 cut(s)	99, 436
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	7 cut(s)	81, 180, 204, 213, 267, 333, 512
Sfr303I	CCGCGG	1 cut(s)	433
SgrBI	CCGCGG	1 cut(s)	433
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	5 cut(s)	295, 300, 395, 430, 432
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	213
TaqI	TCGA	3 cut(s)	249, 258, 267
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	49
TauI	GCSGC	2 cut(s)	297, 303
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	288, 311
Tru9I	TTAA	2 cut(s)	288, 311
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	297
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	383
Tth111I	GACNNNGTC	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.