Rh6AG133400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
20199457 .. 20199857
401 bp
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UTR
Exon/CDS
Intron
Rh6AG133400.1

Sequence Viewer

Length: 231 bp
ATGGTGGAGGTCGCGTCGAAGAAGTTCGTGGTGGTCGCCGAAGGGACGAAACTGGGTGACGGGGCTGGGAGGAAGCGATTTGGCAATGGGTTGTTCTTGAATATGGCGACCGCGATGATCATTGCAAGGAAGGATGGAGTGGATGTGGAGACCAAAATGGTGATATGGATAATTGATAGAGGTTTGGAGGTCGGAGAGAGTGGAATCGGAGATGGGAGGAAAATTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.12

Weight (kDa)

9.22

Isoelectric Point (pI)

6.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 14, 113
AciI CCGC 1 cut(s) 111
AgsI TTSAA 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 68, 172
BccI CCATC 2 cut(s) 128, 206
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 143
BsaXI ACNNNNNCTCC 3 cut(s) 29, 129, 159
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 2 cut(s) 91, 120
BseGI GGATG 2 cut(s) 139, 148
BseMI GCAATG 2 cut(s) 91, 120
BseNI ACTGG 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 14, 113
Bsh1285I CGRYCG 1 cut(s) 111
BsiEI CGRYCG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 58
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 1 cut(s) 111
BspFNI CGCG 2 cut(s) 14, 113
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 2 cut(s) 91, 120
BsrI ACTGG 1 cut(s) 57
BssMI GATC 1 cut(s) 117
BstF5I GGATG 2 cut(s) 139, 148
BstFNI CGCG 2 cut(s) 14, 113
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 117
BstMCI CGRYCG 1 cut(s) 111
BstUI CGCG 2 cut(s) 14, 113
BtgZI GCGATG 1 cut(s) 128
BtsCI GGATG 2 cut(s) 139, 148
CseI GACGC 1 cut(s) 3
CviJI RGCY 1 cut(s) 65
CviKI_1 RGCY 1 cut(s) 65
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 143
FaiI YATR 3 cut(s) 104, 166, 229
FaqI GGGAC 1 cut(s) 58
FbaI TGATCA 1 cut(s) 117
FokI GGATG 2 cut(s) 146, 155
GsaI CCCAGC 1 cut(s) 69
HgaI GACGC 1 cut(s) 3
HinfI GANTC 1 cut(s) 204
HphI GGTGA 2 cut(s) 68, 172
Hpy188I TCNGA 2 cut(s) 194, 209
Hpy188III TCNNGA 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 35, 124
HpyCH4V TGCA 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 38, 51
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 1 cut(s) 31
MluCI AATT 2 cut(s) 171, 222
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 4 cut(s) 63, 173, 181, 210
MroXI GAANNNNTTC 1 cut(s) 23
MvnI CGCG 2 cut(s) 14, 113
NdeII GATC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 117
SetI ASST 3 cut(s) 12, 184, 192
SgeI CNNG 8 cut(s) 25, 40, 65, 73, 78, 109, 124, 138
Sse9I AATT 2 cut(s) 171, 222
SsiI CCGC 1 cut(s) 111
TaqI TCGA 1 cut(s) 17
TasI AATT 2 cut(s) 171, 222
TfiI GAWTC 1 cut(s) 204
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.