Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

19732399 .. 19732656

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG197600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTCAAAACGAACAGAGGGCCAAGCTAGGAGCCTCGACATCCCTCTCTCGATCCTCAACGACCACCCGAAAATCGATCTGGCTATCGACGGTGCCTACGAGGCCGACCCCAATCTGGATTTGGTCAAGGGCTGCGACGACGTGTTGTTAAAGGAGAAGATAGTGGAGGCCGCATTGGAGAAGTTCGTGGTGGTCGTCGACGAGACGAAATTGGTGATGGGACTGGGAGGAAGCGGGCTGGCAATGAGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

85

Amino Acids

9.07

Weight (kDa)

4.53

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	1 - 78	4.8e-22	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	2 cut(s)	171, 234
AclWI	GGATC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	141
AjiI	CACGTC	1 cut(s)	142
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	3 cut(s)	19, 102, 168
ApeKI	GCWGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	133, 171
BlsI	GCNGC	2 cut(s)	134, 172
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	32, 94
BmrI	ACTGGG	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	75
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	119
BshFI	GGCC	3 cut(s)	21, 104, 170
BshNI	GGYRCC	1 cut(s)	92
BshVI	ATCGAT	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	21, 104, 170
Bsp143I	GATC	2 cut(s)	51, 76
BspACI	CCGC	2 cut(s)	171, 234
BspANI	GGCC	3 cut(s)	21, 104, 170
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	32, 94
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	51, 76
Bst4CI	ACNGT	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	236, 240
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	54, 79
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	51, 76
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	21, 104, 170
BsuTUI	ATCGAT	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	236, 240
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	75
CviJI	RGCY	8 cut(s)	21, 26, 33, 83, 104, 132, 170, 238
CviKI_1	RGCY	8 cut(s)	21, 26, 33, 83, 104, 132, 170, 238
DpnI	GATC	2 cut(s)	53, 78
DpnII	GATC	2 cut(s)	51, 76
Esp3I	CGTCTC	1 cut(s)	197
FaqI	GGGAC	1 cut(s)	234
FauI	CCCGC	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	133, 171
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	133, 171
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	2 cut(s)	133, 171
HaeIII	GGCC	3 cut(s)	21, 104, 170
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	3 cut(s)	49, 116, 255
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	5 cut(s)	92, 140, 143, 200, 203
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	51, 76
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	65, 101, 209, 224
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	141
MalI	GATC	2 cut(s)	53, 78
MboI	GATC	2 cut(s)	51, 76
MboII	GAAGA	1 cut(s)	169
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	7 cut(s)	10, 44, 54, 65, 94, 160, 221
MseI	TTAA	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	2 cut(s)	51, 76
NlaIV	GGNNCC	2 cut(s)	32, 94
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 192
PkrI	GCNGC	2 cut(s)	134, 172
PspN4I	GGNNCC	2 cut(s)	32, 94
PspPI	GGNCC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	133, 171
Sau3AI	GATC	2 cut(s)	51, 76
Sau96I	GGNCC	1 cut(s)	19
SetI	ASST	2 cut(s)	28, 144
SgrDI	CGTCGACG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	171, 234
SspMI	CTAG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	5 cut(s)	36, 50, 75, 87, 198
TasI	AATT	1 cut(s)	209
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	1 cut(s)	132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.