Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

82736063 .. 82736278

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTCAAAACAAACCGAGGACCAAGCTACGAGCCTCGGCAACCCTCTCTCGATCCTTGATGACCACCCGAAAATCGATCCGGCCATCGACGGCGCCGACAAGGTCAACCCCAATCTGGATTTGGTCAAGGGCCGCGACGGCGCCTTGTTAAAGGAGAAGATGGTAGAGGCCGCGTTGGACAAGCTTGCGGTGGTCGCCGACGAGACGAAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

71

Amino Acids

7.62

Weight (kDa)

4.75

Isoelectric Point (pI)

23.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	1 - 70	4.4e-21	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	92, 140
AccII	CGCG	2 cut(s)	135, 173
AciI	CCGC	3 cut(s)	133, 171, 188
AclWI	GGATC	2 cut(s)	46, 71
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	2 cut(s)	93, 141
AfiI	CCNNNNNNNGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	26, 184
AluI	AGCT	2 cut(s)	26, 184
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	46, 71
AoxI	GGCC	3 cut(s)	81, 130, 168
AspLEI	GCGC	2 cut(s)	95, 143
AspS9I	GGNCC	2 cut(s)	19, 130
AvaII	GGWCC	1 cut(s)	19
BanI	GGYRCC	2 cut(s)	92, 140
BccI	CCATC	2 cut(s)	92, 154
BceAI	ACGGC	2 cut(s)	106, 154
BcoDI	GTCTC	1 cut(s)	197
BfoI	RGCGCY	2 cut(s)	96, 144
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	133, 171
BlsI	GCNGC	2 cut(s)	134, 172
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	19, 130
BmiI	GGNNCC	2 cut(s)	94, 142
Bsa29I	ATCGAT	1 cut(s)	75
BsaHI	GRCGYC	2 cut(s)	93, 141
BsaJI	CCNNGG	2 cut(s)	15, 34
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	15, 34
BseLI	CCNNNNNNNGG	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	135, 173
BshFI	GGCC	3 cut(s)	83, 132, 170
BshNI	GGYRCC	2 cut(s)	92, 140
BshVI	ATCGAT	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	83, 132, 170
Bsp143I	GATC	2 cut(s)	51, 76
BspACI	CCGC	3 cut(s)	133, 171, 188
BspANI	GGCC	3 cut(s)	83, 132, 170
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	2 cut(s)	135, 173
BspLI	GGNNCC	2 cut(s)	94, 142
BspPI	GGATC	2 cut(s)	46, 71
BspT107I	GGYRCC	2 cut(s)	92, 140
BssECI	CCNNGG	2 cut(s)	15, 34
BssMI	GATC	2 cut(s)	51, 76
BssNI	GRCGYC	2 cut(s)	93, 141
Bst4CI	ACNGT	1 cut(s)	213
BstACI	GRCGYC	2 cut(s)	93, 141
BstC8I	GCNNGC	1 cut(s)	186
BstFNI	CGCG	2 cut(s)	135, 173
BstH2I	RGCGCY	2 cut(s)	96, 144
BstHHI	GCGC	2 cut(s)	95, 143
BstKTI	GATC	2 cut(s)	54, 79
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	51, 76
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 194
BstUI	CGCG	2 cut(s)	135, 173
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	83, 132, 170
BsuTUI	ATCGAT	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	2 cut(s)	95, 143
Cfr13I	GGNCC	2 cut(s)	19, 130
ClaI	ATCGAT	1 cut(s)	75
CviJI	RGCY	6 cut(s)	26, 33, 83, 132, 170, 184
CviKI_1	RGCY	6 cut(s)	26, 33, 83, 132, 170, 184
DinI	GGCGCC	2 cut(s)	94, 142
DpnI	GATC	2 cut(s)	53, 78
DpnII	GATC	2 cut(s)	51, 76
EaeI	YGGCCR	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	19
EgeI	GGCGCC	2 cut(s)	94, 142
EheI	GGCGCC	2 cut(s)	94, 142
Esp3I	CGTCTC	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	133, 171
Fsp4HI	GCNGC	2 cut(s)	133, 171
GlaI	GCGC	2 cut(s)	94, 142
GluI	GCNGC	2 cut(s)	133, 171
HaeII	RGCGCY	2 cut(s)	96, 144
HaeIII	GGCC	3 cut(s)	83, 132, 170
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	2 cut(s)	95, 143
Hin1I	GRCGYC	2 cut(s)	93, 141
Hin6I	GCGC	2 cut(s)	93, 141
HinP1I	GCGC	2 cut(s)	93, 141
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	182
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	49, 116
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	3 cut(s)	92, 140, 203
HpyCH4III	ACNGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 194
Hsp92I	GRCGYC	2 cut(s)	93, 141
HspAI	GCGC	2 cut(s)	93, 141
KasI	GGCGCC	2 cut(s)	92, 140
Kzo9I	GATC	2 cut(s)	51, 76
LpnPI	CCDG	2 cut(s)	93, 101
MalI	GATC	2 cut(s)	53, 78
MboI	GATC	2 cut(s)	51, 76
MboII	GAAGA	1 cut(s)	169
Mly113I	GGCGCC	2 cut(s)	93, 141
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	4 cut(s)	10, 44, 54, 160
MseI	TTAA	1 cut(s)	149
MspI	CCGG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	135, 173
MwoI	GCNNNNNNNGC	2 cut(s)	138, 194
NarI	GGCGCC	2 cut(s)	93, 141
NdeII	GATC	2 cut(s)	51, 76
NlaIV	GGNNCC	2 cut(s)	94, 142
NmeAIII	GCCGAG	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	134, 172
PluTI	GGCGCC	2 cut(s)	96, 144
PspN4I	GGNNCC	2 cut(s)	94, 142
PspPI	GGNCC	2 cut(s)	19, 130
PsyI	GACNNNGTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	133, 171
Sau3AI	GATC	2 cut(s)	51, 76
Sau96I	GGNCC	2 cut(s)	19, 130
SetI	ASST	3 cut(s)	28, 105, 186
SfoI	GGCGCC	2 cut(s)	94, 142
SinI	GGWCC	1 cut(s)	19
SsiI	CCGC	3 cut(s)	133, 171, 188
SspDI	GGCGCC	2 cut(s)	92, 140
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	50, 75, 87
TauI	GCSGC	2 cut(s)	135, 173
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.