Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

37633261 .. 37651770

Gene Structure 18510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG172100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGATCTGGCCATCGACGGCGTCGACGAGGTCGACCCTAATCTGGATTTGGTCAAGGGCCGCTGTAGCGCGATGTTAAAGGAGAAGATGGTGGAGGCCACGTCGAAGAAGGAAGGATGGAGTGGATGTGCAGACCAAGTAATTGGCTTTTTTTGGGATTTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTGGAGGTGAGTGCTGGAACCTCTGATTTGTACTTGTTATGTGTTGTGCAAAATGTTTATTGGTGTATTGTTAGAATGGTGAAATGGATAATTGATAGAGGAAGAAGGCTAGATCTTGTGCTGGTGGTTGATGTTGTTGATGTCGAAGATGCAGTTGTGGTCAGAGATGGTAGCGGTCCCGCTTTTGGCAGGAGTCATGAAGGGTTTCGGGTATTGTTGGGATATCAAGCTTGTTGGAGGAGTGAATATGGTCCAATAGACTATTATGCTTGCAAAGCGGCCACACATTATTTTAGAAGTAATAATGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

167

Amino Acids

18.33

Weight (kDa)

4.8

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	1 - 37	4.8e-10	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	24, 33
AccII	CGCG	1 cut(s)	71
AciI	CCGC	4 cut(s)	61, 363, 369, 467
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	9, 468
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	43, 374
AjiI	CACGTC	1 cut(s)	102
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	9, 58, 96, 468
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	58, 365, 440
AsuHPI	GGTGA	2 cut(s)	208, 280
AvaII	GGWCC	2 cut(s)	365, 440
BalI	TGGCCA	1 cut(s)	11
BccI	CCATC	4 cut(s)	20, 82, 111, 350
BceAI	ACGGC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	64
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	61, 468
BlsI	GCNGC	2 cut(s)	62, 469
Bme18I	GGWCC	2 cut(s)	365, 440
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	58, 365, 440
BmiI	GGNNCC	2 cut(s)	208, 367
BmsI	GCATC	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	21
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 112, 116, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 374
BseGI	GGATG	2 cut(s)	122, 131
BseLI	CCNNNNNNNGG	2 cut(s)	43, 374
BseRI	GAGGAG	1 cut(s)	442
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	11, 60, 98, 470
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	43, 374
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	4 cut(s)	11, 60, 98, 470
Bsp143I	GATC	2 cut(s)	4, 301
BspACI	CCGC	4 cut(s)	61, 363, 369, 467
BspANI	GGCC	4 cut(s)	11, 60, 98, 470
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	208, 367
BspPI	GGATC	1 cut(s)	12
BssMI	GATC	2 cut(s)	4, 301
BssNI	GRCGYC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	460
BstF5I	GGATG	2 cut(s)	122, 131
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	7, 304
BstMBI	GATC	2 cut(s)	4, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 464
BstSFI	CTRYAG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	71
BstX2I	RGATCY	2 cut(s)	4, 301
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	4, 301
BsuRI	GGCC	4 cut(s)	11, 60, 98, 470
BtgZI	GCGATG	1 cut(s)	86
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	122, 131
Cac8I	GCNNGC	1 cut(s)	460
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	58, 365, 440
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	7 cut(s)	11, 60, 98, 147, 298, 419, 470
CviKI_1	RGCY	7 cut(s)	11, 60, 98, 147, 298, 419, 470
CviQI	GTAC	1 cut(s)	220
DpnI	GATC	2 cut(s)	6, 303
DpnII	GATC	2 cut(s)	4, 301
EaeI	YGGCCR	2 cut(s)	9, 468
Eco32I	GATATC	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	365, 440
EcoRV	GATATC	1 cut(s)	413
FaeI	CATG	1 cut(s)	389
FaiI	YATR	4 cut(s)	229, 387, 438, 456
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	1 cut(s)	385
FauI	CCCGC	1 cut(s)	376
FblI	GTMKAC	2 cut(s)	24, 33
Fnu4HI	GCNGC	2 cut(s)	61, 468
FokI	GGATG	2 cut(s)	129, 138
Fsp4HI	GCNGC	2 cut(s)	61, 468
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	2 cut(s)	61, 468
HaeIII	GGCC	4 cut(s)	11, 60, 98, 470
HgaI	GACGC	1 cut(s)	10
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	2 cut(s)	25, 34
HindII	GTYRAC	2 cut(s)	25, 34
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	1 cut(s)	382
HphI	GGTGA	2 cut(s)	208, 280
Hpy166II	GTNNAC	2 cut(s)	25, 34
Hpy188I	TCNGA	3 cut(s)	214, 353, 503
Hpy188III	TCNNGA	2 cut(s)	44, 386
Hpy8I	GTNNAC	2 cut(s)	25, 34
Hpy99I	CGWCG	4 cut(s)	20, 26, 29, 106
HpyAV	CCTTC	4 cut(s)	103, 107, 288, 383
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	4 cut(s)	131, 238, 341, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 464
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	4, 301
LpnPI	CCDG	4 cut(s)	29, 189, 296, 364
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	101
MalI	GATC	2 cut(s)	6, 303
MboI	GATC	2 cut(s)	4, 301
MboII	GAAGA	4 cut(s)	97, 118, 303, 347
MflI	RGATCY	2 cut(s)	4, 301
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	2 cut(s)	141, 279
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	6 cut(s)	22, 88, 187, 220, 281, 420
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	66, 464
NdeII	GATC	2 cut(s)	4, 301
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	2 cut(s)	208, 367
PagI	TCATGA	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 24, 30
PdmI	GAANNNNTTC	1 cut(s)	393
PflFI	GACNNNGTC	2 cut(s)	20, 29
PkrI	GCNGC	2 cut(s)	62, 469
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	208, 367
PspPI	GGNCC	3 cut(s)	58, 365, 440
PsuI	RGATCY	2 cut(s)	4, 301
PsyI	GACNNNGTC	2 cut(s)	20, 29
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SalI	GTCGAC	2 cut(s)	23, 32
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	61, 468
Sau3AI	GATC	2 cut(s)	4, 301
Sau96I	GGNCC	3 cut(s)	58, 365, 440
SchI	GAGTC	1 cut(s)	391
SetI	ASST	5 cut(s)	33, 104, 198, 212, 421
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	64
SgrDI	CGTCGACG	1 cut(s)	23
SinI	GGWCC	2 cut(s)	365, 440
Sse9I	AATT	2 cut(s)	141, 279
SsiI	CCGC	4 cut(s)	61, 363, 369, 467
SspMI	CTAG	1 cut(s)	299
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	5 cut(s)	15, 24, 33, 104, 333
TasI	AATT	2 cut(s)	141, 279
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	2 cut(s)	63, 470
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	402
Tth111I	GACNNNGTC	2 cut(s)	20, 29
VpaK11BI	GGWCC	2 cut(s)	365, 440
XmiI	GTMKAC	2 cut(s)	24, 33
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.