Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

10488811 .. 10489333

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATTGGCACTAGCCCGCCCACCAAACTCATCTCCGATTCCACTCTCTCCGACCTTCAAACCCTCTTTGTCTCCAAGCTAGGCGAGCTCATCAAATCCGGCGAGTCCCGATGTCAAAACGAACCAAGGACCAAGCCGGGAGCCTCGGCATCCCTCTCTCGATCCTCGACGACCCCCGAAAATCAATCGGCCATCGATGGCGCCGACGAGGTCGACCCCAATCTGGATTTGGTCAAGGGCCGCGGTGGTGCGTTGTTAAAGGAGAAGATGGTGGAGGCCGTGTCGGAGAAGTTTGTGGTGGTCGCCGACGAGCCGAAACTAGTGACGGGGCTAGGAGGAAGCGGCCGGCAATGGGTTGTTCTTGAATATGGTGACCACGGTGATCATTGTAGGGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

133

Amino Acids

14.08

Weight (kDa)

5.02

Isoelectric Point (pI)

26.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	53 - 112	1.4e-19	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	243
AciI	CCGC	4 cut(s)	17, 241, 243, 342
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	189, 343
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	223, 352
AgsI	TTSAA	2 cut(s)	59, 365
AhlI	ACTAGT	1 cut(s)	319
AluBI	AGCT	2 cut(s)	79, 88
AluI	AGCT	2 cut(s)	79, 88
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	156
AoxI	GGCC	4 cut(s)	189, 238, 276, 343
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	129, 238
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	383, 392
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	3 cut(s)	191, 200, 262
BceAI	ACGGC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	76
BcuI	ACTAGT	1 cut(s)	319
BfaI	CTAG	4 cut(s)	12, 80, 320, 332
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	2 cut(s)	241, 343
BlsI	GCNGC	2 cut(s)	242, 344
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	129, 238
BmiI	GGNNCC	2 cut(s)	142, 202
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	4 cut(s)	125, 144, 241, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 352
Bse118I	RCCGGY	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	4 cut(s)	125, 144, 241, 376
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	223, 352
BseMI	GCAATG	1 cut(s)	356
BseX3I	CGGCCG	1 cut(s)	343
Bsh1236I	CGCG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	4 cut(s)	191, 240, 278, 345
BshNI	GGYRCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	99, 137, 346
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	223, 352
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	191, 240, 278, 345
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	161, 382
BspACI	CCGC	4 cut(s)	17, 241, 243, 342
BspANI	GGCC	4 cut(s)	191, 240, 278, 345
BspDI	ATCGAT	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	142, 202
BspPI	GGATC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	4 cut(s)	125, 144, 241, 376
BssMI	GATC	2 cut(s)	161, 382
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	17, 86, 347
BstDSI	CCRYGG	2 cut(s)	241, 376
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	164, 385
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	161, 382
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	136
BstUI	CGCG	1 cut(s)	243
BstZI	CGGCCG	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	191, 240, 278, 345
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	2 cut(s)	241, 376
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	3 cut(s)	17, 86, 347
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	129, 238
Cfr42I	CCGCGG	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	195
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	2 cut(s)	163, 384
DpnII	GATC	2 cut(s)	161, 382
EaeI	YGGCCR	2 cut(s)	189, 343
EagI	CGGCCG	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	129
Eco52I	CGGCCG	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	125
FaiI	YATR	1 cut(s)	369
FaqI	GGGAC	1 cut(s)	91
FauI	CCCGC	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	241, 343
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	241, 343
FspBI	CTAG	4 cut(s)	12, 80, 320, 332
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	241, 343
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	191, 240, 278, 345
HapII	CCGG	3 cut(s)	99, 137, 346
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	38, 104
HpaII	CCGG	3 cut(s)	99, 137, 346
HphI	GGTGA	2 cut(s)	383, 392
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	37, 52, 286
Hpy188III	TCNNGA	4 cut(s)	108, 159, 224, 362
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	3 cut(s)	172, 209, 311
HpyAV	CCTTC	2 cut(s)	65, 389
HpyCH4III	ACNGT	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	382
KspI	CCGCGG	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	161, 382
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	112, 150, 209, 359
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	4 cut(s)	12, 80, 320, 332
MaeIII	GTNAC	2 cut(s)	322, 371
MalI	GATC	2 cut(s)	163, 384
MboI	GATC	2 cut(s)	161, 382
MboII	GAAGA	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	90
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	75, 264
MnlI	CCTC	7 cut(s)	74, 154, 164, 175, 202, 268, 329
MroNI	GCCGGC	1 cut(s)	345
MseI	TTAA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	3 cut(s)	99, 137, 346
MspR9I	CCNGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	85
NaeI	GCCGGC	1 cut(s)	347
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	2 cut(s)	161, 382
NgoMIV	GCCGGC	1 cut(s)	345
NlaIV	GGNNCC	2 cut(s)	142, 202
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	322, 371
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	38
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	242, 344
PleI	GAGTC	1 cut(s)	112
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	90
PspEI	GGTNACC	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	142, 202
PspPI	GGNCC	2 cut(s)	129, 238
PsyI	GACNNNGTC	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	90
SacII	CCGCGG	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	241, 343
Sau3AI	GATC	2 cut(s)	161, 382
Sau96I	GGNCC	2 cut(s)	129, 238
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	4 cut(s)	57, 81, 90, 213
SfaNI	GCATC	1 cut(s)	158
SfoI	GGCGCC	1 cut(s)	202
Sfr303I	CCGCGG	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	129
SpeI	ACTAGT	1 cut(s)	319
SsiI	CCGC	4 cut(s)	17, 241, 243, 342
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	4 cut(s)	12, 80, 320, 332
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	4 cut(s)	160, 167, 195, 213
TauI	GCSGC	2 cut(s)	243, 345
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TseFI	GTSAC	2 cut(s)	322, 371
Tsp45I	GTSAC	2 cut(s)	322, 371
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	4 cut(s)	12, 80, 320, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.