Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

14137609 .. 14140842

Gene Structure 3234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTAATTGCCCGTTTCCAGAATTGGCATATTGGTCATCAAAAGAAACCAATCTCCGATTCCACTCTCTCCGACCTCCAAACCATCTTCGCCTCCAAGCTTGGCAAGCTCATCAAATCCGGCGAGTCCCGACCTCAAAACGAACAGAGGACCAAGCTAGGTGCCTCAGCATCCCTCTCTCGATCCTCGACGACCACCCGAAAATCGATCTGGCCATTGATGGCGGCGACGAGGTCGACCCCAATTTGGATTTGGTCAAGGGCCGCGGCGGCGCATTGTTAAAGGAGAAGATGGTGGAGGTCGCGTCGGAGAAGTTCGTGGTGGTCGCTGACAAGACGAAATTGGTGATGGGACTGGGAGGAAGCGGGCTGGCAATGGGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

130

Amino Acids

14.2

Weight (kDa)

7.76

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	43 - 121	3.9e-28	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	267, 305
AciI	CCGC	5 cut(s)	225, 265, 267, 270, 366
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	101, 110, 158
AluI	AGCT	3 cut(s)	101, 110, 158
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	2 cut(s)	213, 262
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	151, 262
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	167
BccI	CCATC	4 cut(s)	93, 215, 286, 343
BfaI	CTAG	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	270
BisI	GCNGC	4 cut(s)	226, 265, 268, 271
BlsI	GCNGC	4 cut(s)	227, 266, 269, 272
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 262
BmiI	GGNNCC	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	360
Bsh1236I	CGCG	2 cut(s)	267, 305
BshFI	GGCC	2 cut(s)	215, 264
BshNI	GGYRCC	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	2 cut(s)	113, 366
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	113, 366
BsnI	GGCC	2 cut(s)	215, 264
Bsp143I	GATC	2 cut(s)	183, 208
BspACI	CCGC	5 cut(s)	225, 265, 267, 270, 366
BspANI	GGCC	2 cut(s)	215, 264
BspCNI	CTCAG	1 cut(s)	180
BspDI	ATCGAT	1 cut(s)	207
BspFNI	CGCG	2 cut(s)	267, 305
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	2 cut(s)	183, 208
BstC8I	GCNNGC	3 cut(s)	108, 368, 372
BstDEI	CTNAG	1 cut(s)	167
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	267, 305
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	186, 211
BstMBI	GATC	2 cut(s)	183, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 270
BstUI	CGCG	2 cut(s)	267, 305
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	215, 264
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	108, 368, 372
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	151, 262
Cfr42I	CCGCGG	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	207
CseI	GACGC	1 cut(s)	294
CviJI	RGCY	7 cut(s)	5, 101, 110, 158, 215, 264, 370
CviKI_1	RGCY	7 cut(s)	5, 101, 110, 158, 215, 264, 370
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	185, 210
DpnII	GATC	2 cut(s)	183, 208
EaeI	YGGCCR	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	151
FaiI	YATR	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	113, 366
FauI	CCCGC	1 cut(s)	359
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	226, 265, 268, 271
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	4 cut(s)	226, 265, 268, 271
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	226, 265, 268, 271
HaeIII	GGCC	2 cut(s)	215, 264
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	60, 126
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	59, 74, 310
Hpy188III	TCNNGA	4 cut(s)	20, 130, 181, 387
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	3 cut(s)	194, 233, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 270
HpyF3I	CTNAG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	273
KspI	CCGCGG	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	183, 208
LpnPI	CCDG	5 cut(s)	33, 134, 197, 341, 356
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	159
MalI	GATC	2 cut(s)	185, 210
MboI	GATC	2 cut(s)	183, 208
MboII	GAAGA	2 cut(s)	80, 301
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	4 cut(s)	7, 23, 244, 341
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	97, 288
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	121
MvnI	CGCG	2 cut(s)	267, 305
MwoI	GCNNNNNNNGC	2 cut(s)	107, 270
NdeII	GATC	2 cut(s)	183, 208
NlaIV	GGNNCC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	60
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	227, 266, 269, 272
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	151, 262
PsyI	GACNNNGTC	1 cut(s)	233
SacII	CCGCGG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	4 cut(s)	226, 265, 268, 271
Sau3AI	GATC	2 cut(s)	183, 208
Sau96I	GGNCC	2 cut(s)	151, 262
SchI	GAGTC	1 cut(s)	135
SetI	ASST	8 cut(s)	79, 103, 112, 137, 160, 164, 237, 303
SfaNI	GCATC	1 cut(s)	180
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	151
Sse9I	AATT	4 cut(s)	7, 23, 244, 341
SsiI	CCGC	5 cut(s)	225, 265, 267, 270, 366
SspMI	CTAG	1 cut(s)	159
TaqI	TCGA	4 cut(s)	182, 189, 207, 237
TasI	AATT	4 cut(s)	7, 23, 244, 341
TauI	GCSGC	4 cut(s)	228, 267, 270, 273
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.