Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

13941227 .. 13941966

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATTGGCACTAGCCCAGCCACCAGTCCTTGCCATCTTGCTTCCTCCAATTCCGGCAACTCCTCCATCTCCACCCACCTCCTCTCCAGTGACCCTGAAATCAACCTAATACTCAATCCCAACCCATCTCCTATTCGTTCATCAAAAGAAACCCATCTCCGATTCCACTCTCTCCGACCTCCAAACCCTCTTTGTCTCCAAGCTCGGCGAGCTCATCAAATCCGGCGAGTCCCGACATCAAAACAAACCGAGGACCAAGCTAGGAGCCTCCGCATCCCTCTCTTGATCCTCGACGACCACCCGAAAATCAATCTGGCCATCGACAGCGTCGACGAGGTTGACTCCAATTTGGATTTGGTCAAGGGCCACGGCGGCGCGTTGTTAAAGGAGAAGATGGTGGAGGCCGCATTCAGAGAAGTTCGTGGTGGTCGCCGACGAGACGAAACTAGTGACGGGGCTGGGAGGAAGCGGGCTGGCAATGGGTTGTTCTTGAATATGGCGACCACGGTGATCATTGCAGGGAGTGATGGAGTGGATGTGCAGACCAAAATGGTGAAATGGAAAATTGATAAAAATTTGGAGGACGGAGAGAGTGGAATCGGAGATGGGAGGTGGGTGGAGATGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

211

Amino Acids

22.97

Weight (kDa)

7.07

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	77 - 136	9.5e-19	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	377
AciI	CCGC	4 cut(s)	271, 372, 405, 469
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	574
AgsI	TTSAA	1 cut(s)	493
AhlI	ACTAGT	1 cut(s)	446
AluBI	AGCT	3 cut(s)	203, 212, 260
AluI	AGCT	3 cut(s)	203, 212, 260
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	200, 432
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	3 cut(s)	315, 364, 402
ApoI	RAATTY	1 cut(s)	574
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	253, 364
AsuHPI	GGTGA	2 cut(s)	520, 565
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	214
BccI	CCATC	9 cut(s)	42, 74, 133, 162, 326, 388, 521, 599, 616
BceAI	ACGGC	1 cut(s)	385
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	200, 432
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	3 cut(s)	12, 261, 447
BglI	GCCNNNNNGGC	1 cut(s)	372
BisI	GCNGC	2 cut(s)	373, 405
BlsI	GCNGC	2 cut(s)	374, 406
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	253, 364
BmiI	GGNNCC	1 cut(s)	266
BmsI	GCATC	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpmI	CTGGAG	1 cut(s)	70
BsaJI	CCNNGG	3 cut(s)	249, 367, 504
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 522, 552
Bse1I	ACTGG	2 cut(s)	24, 87
Bse3DI	GCAATG	2 cut(s)	484, 513
BseDI	CCNNGG	3 cut(s)	249, 367, 504
BseGI	GGATG	2 cut(s)	273, 541
BseMI	GCAATG	2 cut(s)	484, 513
BseNI	ACTGG	2 cut(s)	24, 87
BseRI	GAGGAG	2 cut(s)	52, 71
BseYI	CCCAGC	2 cut(s)	16, 458
BsgI	GTGCAG	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	3 cut(s)	317, 366, 404
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	54, 223
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	200, 432
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	317, 366, 404
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	285, 510
BspACI	CCGC	4 cut(s)	271, 372, 405, 469
BspANI	GGCC	3 cut(s)	317, 366, 404
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	280
BsrDI	GCAATG	2 cut(s)	484, 513
BsrI	ACTGG	2 cut(s)	24, 87
BssECI	CCNNGG	3 cut(s)	249, 367, 504
BssMI	GATC	2 cut(s)	285, 510
Bst4CI	ACNGT	1 cut(s)	508
BstC8I	GCNNGC	3 cut(s)	210, 471, 475
BstDSI	CCRYGG	2 cut(s)	367, 504
BstF5I	GGATG	2 cut(s)	273, 541
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	2 cut(s)	288, 513
BstMAI	GTCTC	2 cut(s)	200, 432
BstMBI	GATC	2 cut(s)	285, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 372
BstUI	CGCG	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	317, 366, 404
BtgI	CCRYGG	2 cut(s)	367, 504
BtsCI	GGATG	2 cut(s)	273, 541
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	210, 471, 475
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	253, 364
CseI	GACGC	1 cut(s)	316
DpnI	GATC	2 cut(s)	287, 512
DpnII	GATC	2 cut(s)	285, 510
EaeI	YGGCCR	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	432
FaiI	YATR	1 cut(s)	497
FaqI	GGGAC	1 cut(s)	215
FauI	CCCGC	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	373, 405
FokI	GGATG	2 cut(s)	260, 548
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	2 cut(s)	373, 405
FspBI	CTAG	3 cut(s)	12, 261, 447
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	2 cut(s)	373, 405
GsaI	CCCAGC	2 cut(s)	20, 462
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	317, 366, 404
HapII	CCGG	2 cut(s)	54, 223
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	2 cut(s)	331, 340
HindII	GTYRAC	2 cut(s)	331, 340
HinfI	GANTC	4 cut(s)	162, 228, 341, 597
HpaII	CCGG	2 cut(s)	54, 223
HphI	GGTGA	2 cut(s)	520, 565
Hpy166II	GTNNAC	2 cut(s)	331, 340
Hpy188I	TCNGA	4 cut(s)	161, 176, 413, 602
Hpy188III	TCNNGA	3 cut(s)	232, 283, 490
Hpy8I	GTNNAC	2 cut(s)	331, 340
Hpy99I	CGWCG	4 cut(s)	296, 332, 335, 438
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	2 cut(s)	518, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 372
HspAI	GCGC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	285, 510
LmnI	GCTCC	1 cut(s)	264
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	3 cut(s)	12, 261, 447
MaeIII	GTNAC	2 cut(s)	89, 449
MalI	GATC	2 cut(s)	287, 512
MboI	GATC	2 cut(s)	285, 510
MboII	GAAGA	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	4 cut(s)	49, 346, 564, 574
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	2 cut(s)	237, 335
MmeI	TCCRAC	1 cut(s)	199
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	317
MspI	CCGG	2 cut(s)	54, 223
Mva1269I	GAATGC	1 cut(s)	407
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	209, 372
NdeII	GATC	2 cut(s)	285, 510
NlaIV	GGNNCC	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	89, 449
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	162, 597
PflFI	GACNNNGTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	374, 406
PleI	GAGTC	2 cut(s)	236, 335
PpsI	GAGTC	2 cut(s)	236, 335
Psp124BI	GAGCTC	1 cut(s)	214
PspFI	CCCAGC	2 cut(s)	16, 458
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	253, 364
PsyI	GACNNNGTC	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	2 cut(s)	373, 405
Sau3AI	GATC	2 cut(s)	285, 510
Sau96I	GGNCC	2 cut(s)	253, 364
SchI	GAGTC	2 cut(s)	237, 335
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	8 cut(s)	81, 108, 181, 205, 214, 262, 339, 614
SfaNI	GCATC	1 cut(s)	282
SgrDI	CGTCGACG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	253
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	4 cut(s)	49, 346, 564, 574
SsiI	CCGC	4 cut(s)	271, 372, 405, 469
SspMI	CTAG	3 cut(s)	12, 261, 447
SstI	GAGCTC	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	508
TaqI	TCGA	3 cut(s)	291, 321, 330
TasI	AATT	4 cut(s)	49, 346, 564, 574
TauI	GCSGC	2 cut(s)	375, 407
TfiI	GAWTC	2 cut(s)	162, 597
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	2 cut(s)	89, 449
Tsp45I	GTSAC	2 cut(s)	89, 449
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	94
Tth111I	GACNNNGTC	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	3 cut(s)	12, 261, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.