Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004058.1

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

114609 .. 116521

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004058.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgcactgccacctccggaaatcatggccccagccactgtacacagccaccagtccttgccatcttgcttcctccaattccggcaactcctccatctccacccacctcttctccagtgaccctcagatcaacccaatactcaatcccaacccatctcctatttggcgagctcatcaaatcaggcgagtcccgacgtcaaaacgaaccgaggaccaagctaggagcctcgacatccctctctcaatcctcgacgaccacccgaaaatcgatctggccatagatggcgtcgacgaggtcgaccccaatttggatttggtcaagggtcgcggcggcgcgttgttaaaggagaagatggtggaggccgcgtcggataaggaaggatggagtggatgtgcagaccaagtgattggctttttttgggattttggtggtggtggtggtggtgtggaggtgagtgctggaacctctgatttgtacttgttatgtgttgtgcaaaatgtttattggtgtattgttagaatggtgaaatggataaatgatagaggtttagaggtcggagagtggaatcggagatgggaggtgggtggagatggaggaataggtacagaacctcccgtgcgcgaaaactccgtcatcgattccagagtaaagctcggatcgtcaagcctccaaactcctcagcggcggccccaaagctcctatcgaaaacgaatctctctctaccgcttaatcgaagaatttaaccggtggcggcgagctgcgagcggcgggagtcgaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

260

Amino Acids

28.9

Weight (kDa)

8.28

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	765
AccI	GTMKAC	2 cut(s)	288, 297
AccII	CGCG	4 cut(s)	327, 335, 365, 621
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	9 cut(s)	327, 330, 363, 682, 685, 724, 751, 765, 768
AclWI	GGATC	1 cut(s)	664
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	737
AcyI	GRCGYC	2 cut(s)	194, 285
AfaI	GTAC	3 cut(s)	41, 476, 604
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgeI	ACCGGT	1 cut(s)	744
AluBI	AGCT	5 cut(s)	170, 218, 652, 696, 758
AluI	AGCT	5 cut(s)	170, 218, 652, 696, 758
Alw21I	GWGCWC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	664
AlwNI	CAGNNNCTG	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	4 cut(s)	26, 273, 360, 686
ApeKI	GCWGC	1 cut(s)	758
ApoI	RAATTY	1 cut(s)	737
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
AsiGI	ACCGGT	1 cut(s)	744
AspLEI	GCGC	2 cut(s)	335, 621
AspS9I	GGNCC	3 cut(s)	27, 211, 687
AsuHPI	GGTGA	2 cut(s)	463, 535
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	172
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	8 cut(s)	69, 101, 160, 275, 346, 375, 567, 584
BfaI	CTAG	1 cut(s)	219
BisI	GCNGC	8 cut(s)	328, 331, 363, 683, 686, 752, 759, 766
BlsI	GCNGC	8 cut(s)	329, 332, 364, 684, 687, 753, 760, 767
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	3 cut(s)	27, 211, 687
BmiI	GGNNCC	4 cut(s)	29, 224, 463, 689
BplI	GAGNNNNNCTC	2 cut(s)	636, 668
BpmI	CTGGAG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	678
Bsa29I	ATCGAT	2 cut(s)	267, 636
BsaHI	GRCGYC	2 cut(s)	194, 285
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	2 cut(s)	15, 744
BsaXI	ACNNNNNCTCC	8 cut(s)	95, 125, 350, 376, 380, 406, 595, 625
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	744
Bse1I	ACTGG	2 cut(s)	51, 114
BseAI	TCCGGA	1 cut(s)	15
BseCI	ATCGAT	2 cut(s)	267, 636
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	3 cut(s)	231, 386, 395
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	137, 692
BseNI	ACTGG	2 cut(s)	51, 114
BseRI	GAGGAG	2 cut(s)	79, 666
BseXI	GCAGC	1 cut(s)	745
BseYI	CCCAGC	1 cut(s)	30
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	4 cut(s)	327, 335, 365, 621
BshFI	GGCC	4 cut(s)	28, 275, 362, 688
BshTI	ACCGGT	1 cut(s)	744
BshVI	ATCGAT	2 cut(s)	267, 636
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	3 cut(s)	16, 81, 745
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	4 cut(s)	28, 275, 362, 688
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	126, 268, 656
BspACI	CCGC	9 cut(s)	327, 330, 363, 682, 685, 724, 751, 765, 768
BspANI	GGCC	4 cut(s)	28, 275, 362, 688
BspCNI	CTCAG	2 cut(s)	136, 691
BspDI	ATCGAT	2 cut(s)	267, 636
BspEI	TCCGGA	1 cut(s)	15
BspFNI	CGCG	4 cut(s)	327, 335, 365, 621
BspLI	GGNNCC	4 cut(s)	29, 224, 463, 689
BspPI	GGATC	1 cut(s)	664
BsrBI	CCGCTC	1 cut(s)	765
BsrFI	RCCGGY	1 cut(s)	744
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	51, 114
BssAI	RCCGGY	1 cut(s)	744
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	126, 268, 656
BssNI	GRCGYC	2 cut(s)	194, 285
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	2 cut(s)	194, 285
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	168, 756, 763
BstDEI	CTNAG	2 cut(s)	123, 678
BstF5I	GGATG	3 cut(s)	231, 386, 395
BstFNI	CGCG	4 cut(s)	327, 335, 365, 621
BstHHI	GCGC	2 cut(s)	335, 621
BstKTI	GATC	3 cut(s)	129, 271, 659
BstMBI	GATC	3 cut(s)	126, 268, 656
BstUI	CGCG	4 cut(s)	327, 335, 365, 621
BstV1I	GCAGC	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	407
Bsu15I	ATCGAT	2 cut(s)	267, 636
BsuRI	GGCC	4 cut(s)	28, 275, 362, 688
BsuTUI	ATCGAT	2 cut(s)	267, 636
BtsCI	GGATG	3 cut(s)	231, 386, 395
BtsI	GCAGTG	1 cut(s)	4
BtsIMutI	CAGTG	3 cut(s)	4, 35, 121
Cac8I	GCNNGC	3 cut(s)	168, 756, 763
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	2 cut(s)	335, 621
Cfr10I	RCCGGY	1 cut(s)	744
Cfr13I	GGNCC	3 cut(s)	27, 211, 687
ClaI	ATCGAT	2 cut(s)	267, 636
CseI	GACGC	2 cut(s)	274, 354
Csp6I	GTAC	3 cut(s)	40, 475, 603
CspAI	ACCGGT	1 cut(s)	744
CviAII	CATG	1 cut(s)	24
CviQI	GTAC	3 cut(s)	40, 475, 603
DdeI	CTNAG	2 cut(s)	123, 678
DpnI	GATC	3 cut(s)	128, 270, 658
DpnII	GATC	3 cut(s)	126, 268, 656
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	1 cut(s)	27
FaiI	YATR	3 cut(s)	25, 278, 484
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	23
FauI	CCCGC	1 cut(s)	761
FblI	GTMKAC	2 cut(s)	288, 297
Fnu4HI	GCNGC	8 cut(s)	328, 331, 363, 683, 686, 752, 759, 766
FokI	GGATG	3 cut(s)	218, 393, 402
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	8 cut(s)	328, 331, 363, 683, 686, 752, 759, 766
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	2 cut(s)	334, 620
GluI	GCNGC	8 cut(s)	328, 331, 363, 683, 686, 752, 759, 766
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	4 cut(s)	28, 275, 362, 688
HapII	CCGG	3 cut(s)	16, 81, 745
HgaI	GACGC	2 cut(s)	274, 354
HhaI	GCGC	2 cut(s)	335, 621
Hin1I	GRCGYC	2 cut(s)	194, 285
Hin1II	CATG	1 cut(s)	27
Hin6I	GCGC	2 cut(s)	333, 619
HinP1I	GCGC	2 cut(s)	333, 619
HincII	GTYRAC	2 cut(s)	289, 298
HindII	GTYRAC	2 cut(s)	289, 298
HinfI	GANTC	5 cut(s)	186, 565, 638, 711, 772
HpaII	CCGG	3 cut(s)	16, 81, 745
HphI	GGTGA	2 cut(s)	463, 535
Hpy166II	GTNNAC	3 cut(s)	42, 289, 298
Hpy188I	TCNGA	6 cut(s)	126, 370, 469, 557, 570, 656
Hpy188III	TCNNGA	3 cut(s)	16, 190, 642
Hpy8I	GTNNAC	3 cut(s)	42, 289, 298
Hpy99I	CGWCG	5 cut(s)	196, 254, 290, 293, 370
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	4, 395, 493
HpyF3I	CTNAG	2 cut(s)	123, 678
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	2 cut(s)	194, 285
Hsp92II	CATG	1 cut(s)	27
HspAI	GCGC	2 cut(s)	333, 619
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	126, 268, 656
LmnI	GCTCC	2 cut(s)	222, 701
Lsp1109I	GCAGC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	128, 270, 658
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	3 cut(s)	126, 268, 656
MboII	GAAGA	3 cut(s)	100, 361, 746
MhlI	GDGCHC	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	76, 304, 737, 778
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	195, 781
MmeI	TCCRAC	2 cut(s)	348, 535
Mox20I	TGGCCA	1 cut(s)	275
MroI	TCCGGA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	3 cut(s)	341, 728, 741
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	3 cut(s)	16, 81, 745
MvnI	CGCG	4 cut(s)	327, 335, 365, 621
NdeII	GATC	3 cut(s)	126, 268, 656
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	4 cut(s)	29, 224, 463, 689
NmuCI	GTSAC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	565, 638, 711
PflFI	GACNNNGTC	1 cut(s)	293
PinAI	ACCGGT	1 cut(s)	744
PkrI	GCNGC	8 cut(s)	329, 332, 364, 684, 687, 753, 760, 767
PleI	GAGTC	2 cut(s)	194, 780
PpsI	GAGTC	2 cut(s)	194, 780
Psp124BI	GAGCTC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	4 cut(s)	29, 224, 463, 689
PspPI	GGNCC	3 cut(s)	27, 211, 687
PstNI	CAGNNNCTG	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	41, 476, 604
RsaNI	GTAC	3 cut(s)	40, 475, 603
SacI	GAGCTC	1 cut(s)	172
SalI	GTCGAC	2 cut(s)	287, 296
SaqAI	TTAA	3 cut(s)	341, 728, 741
SatI	GCNGC	8 cut(s)	328, 331, 363, 683, 686, 752, 759, 766
Sau3AI	GATC	3 cut(s)	126, 268, 656
Sau96I	GGNCC	3 cut(s)	27, 211, 687
SchI	GAGTC	2 cut(s)	195, 781
SduI	GDGCHC	1 cut(s)	172
SgrDI	CGTCGACG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	4 cut(s)	76, 304, 737, 778
SsiI	CCGC	9 cut(s)	327, 330, 363, 682, 685, 724, 751, 765, 768
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	9 cut(s)	228, 249, 267, 288, 297, 636, 703, 732, 775
TasI	AATT	4 cut(s)	76, 304, 737, 778
TatI	WGTACW	2 cut(s)	39, 474
TauI	GCSGC	7 cut(s)	330, 333, 365, 685, 688, 754, 768
TfiI	GAWTC	3 cut(s)	565, 638, 711
Tru1I	TTAA	3 cut(s)	341, 728, 741
Tru9I	TTAA	3 cut(s)	341, 728, 741
TscAI	CASTG	2 cut(s)	42, 121
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	2 cut(s)	42, 121
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	737
XcmI	CCANNNNNNNNNTGG	2 cut(s)	159, 310
XmiI	GTMKAC	2 cut(s)	288, 297
XspI	CTAG	1 cut(s)	219
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.