Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

41321556 .. 41322065

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCAAAACGAACCGAGGACCAACCTAGGAGCCTCGGCATCCCTCTCTCGATCCTCGACGACCACCCGAAAATCGATCTGGCCATTGACAACACTGACGAGGTCAACCCCAATCTGGATTTGGTCAAGGGCCGCAGCGGTGGGTTGTTAAAGGAGAAGATGGTGGAGGCCGCGTTGGAGAAGTTCGTGGTGGTCACCGACAAAACAAAACTAGTGACGGGGCTGGGAGGAAGCGGCTGGCAATGGGTTGTTCTTGAATATGGTGACCGCGGTGATCATTGCAGAGAAAGATGGAGTGGATGTGCAGACCAAGTGATTGGCTTTTTTTGGGATTTTGGTGGTGGTGGTGGTTTGGAGGTGAGTGCTAGAACCTCTAATTTGTACTTGTTATGTGTTGTGGAAAATGTTTATTGGTGTATTGTTAGAATGGTGAAATGGATAATTGATAGAGGTTTGGAGATCGGAGATAGTGGAATCAGAGATGGGAGGTGGGTGGAGATGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

169

Amino Acids

18.92

Weight (kDa)

4.85

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	1 - 76	2e-21	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	173, 270
AciI	CCGC	6 cut(s)	133, 138, 171, 234, 268, 270
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	257
AhlI	ACTAGT	1 cut(s)	211
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	3 cut(s)	81, 130, 168
ApeKI	GCWGC	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	19, 130
AsuHPI	GGTGA	5 cut(s)	187, 275, 284, 370, 442
AvaII	GGWCC	1 cut(s)	19
AvrII	CCTAGG	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	4 cut(s)	154, 285, 476, 493
BclI	TGATCA	1 cut(s)	274
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	3 cut(s)	27, 212, 366
BisI	GCNGC	4 cut(s)	133, 136, 171, 235
BlnI	CCTAGG	1 cut(s)	26
BlsI	GCNGC	4 cut(s)	134, 137, 172, 236
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	19, 130
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	4 cut(s)	15, 26, 34, 268
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 286, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	2 cut(s)	248, 277
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	4 cut(s)	15, 26, 34, 268
BseGI	GGATG	2 cut(s)	39, 305
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	2 cut(s)	248, 277
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	2 cut(s)	173, 270
BshFI	GGCC	3 cut(s)	83, 132, 170
BshVI	ATCGAT	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	3 cut(s)	83, 132, 170
Bsp143I	GATC	4 cut(s)	51, 76, 274, 459
BspACI	CCGC	6 cut(s)	133, 138, 171, 234, 268, 270
BspANI	GGCC	3 cut(s)	83, 132, 170
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	2 cut(s)	173, 270
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	248, 277
BssECI	CCNNGG	4 cut(s)	15, 26, 34, 268
BssMI	GATC	4 cut(s)	51, 76, 274, 459
BssT1I	CCWWGG	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	268
BstEII	GGTNACC	2 cut(s)	193, 263
BstF5I	GGATG	2 cut(s)	39, 305
BstFNI	CGCG	2 cut(s)	173, 270
BstKTI	GATC	4 cut(s)	54, 79, 277, 462
BstMBI	GATC	4 cut(s)	51, 76, 274, 459
BstPI	GGTNACC	2 cut(s)	193, 263
BstUI	CGCG	2 cut(s)	173, 270
BstV1I	GCAGC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	317
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	83, 132, 170
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	39, 305
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	19, 130
Cfr42I	CCGCGG	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	382
CviJI	RGCY	7 cut(s)	33, 83, 132, 170, 223, 237, 321
CviKI_1	RGCY	7 cut(s)	33, 83, 132, 170, 223, 237, 321
CviQI	GTAC	1 cut(s)	382
DpnI	GATC	4 cut(s)	53, 78, 276, 461
DpnII	GATC	4 cut(s)	51, 76, 274, 459
EaeI	YGGCCR	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	19
Eco91I	GGTNACC	2 cut(s)	193, 263
EcoO65I	GGTNACC	2 cut(s)	193, 263
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaiI	YATR	2 cut(s)	261, 391
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	133, 136, 171, 235
FokI	GGATG	2 cut(s)	26, 312
Fsp4HI	GCNGC	4 cut(s)	133, 136, 171, 235
FspBI	CTAG	3 cut(s)	27, 212, 366
GluI	GCNGC	4 cut(s)	133, 136, 171, 235
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	83, 132, 170
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	474
HphI	GGTGA	5 cut(s)	187, 275, 284, 370, 442
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	464, 479
Hpy188III	TCNNGA	3 cut(s)	49, 116, 254
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	282, 305
Ksp22I	TGATCA	1 cut(s)	274
KspI	CCGCGG	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	51, 76, 274, 459
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	65, 101, 209, 223
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	27, 212, 366
MaeIII	GTNAC	3 cut(s)	193, 214, 263
MalI	GATC	4 cut(s)	53, 78, 276, 461
MboI	GATC	4 cut(s)	51, 76, 274, 459
MboII	GAAGA	1 cut(s)	169
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	376, 441
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	156
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	138, 270
MvnI	CGCG	2 cut(s)	173, 270
NdeII	GATC	4 cut(s)	51, 76, 274, 459
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	3 cut(s)	193, 214, 263
PfeI	GAWTC	1 cut(s)	474
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	134, 137, 172, 236
PspEI	GGTNACC	2 cut(s)	193, 263
PspFI	CCCAGC	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	19, 130
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SacII	CCGCGG	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	4 cut(s)	133, 136, 171, 235
Sau3AI	GATC	4 cut(s)	51, 76, 274, 459
Sau96I	GGNCC	2 cut(s)	19, 130
SetI	ASST	6 cut(s)	28, 105, 360, 374, 454, 491
SfaNI	GCATC	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	271
SgrBI	CCGCGG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	19
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	2 cut(s)	376, 441
SsiI	CCGC	6 cut(s)	133, 138, 171, 234, 268, 270
SspMI	CTAG	3 cut(s)	27, 212, 366
StyI	CCWWGG	1 cut(s)	26
TaqI	TCGA	3 cut(s)	50, 57, 75
TasI	AATT	2 cut(s)	376, 441
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	3 cut(s)	135, 173, 237
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	3 cut(s)	193, 214, 263
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	3 cut(s)	193, 214, 263
TspRI	CASTG	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	26
XspI	CTAG	3 cut(s)	27, 212, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.