Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

5591667 .. 5592180

Gene Structure 514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016309

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCAAAACGAACCGAGGACCAAGATAGGAGCCTTGGCATCCCTCTCTTGATCCTCGACGACTACCCAAAAATCGATCTGGCCATTAACGGCGTCGACGAGGTCGACCCCAATCTGGATTTGGTCAAGGGCTGCAGCGGCGCATTGTTAAAGGAGAAGATAGTGGAGGCTGCGTCGGAGAAATTCGTGGTGGTCGCCGACGAGACGAAACTAGTGACGGGGCTGGGAAGAAGCGGGGAAGGATGGAGTGGATGTGCAGACCAAGCGATTGGCTTTTTTTGGGATTTTGGTGGTGGTGGTGGTGGTGTGGAGGTGAGTGTTGGAACCTCTGATTTGTACTTGTTATGTGTTGTGCAAAATGTTTATTGGTGTATTGTTAGAAAGGTGAAATGGATAATTGATAGAGGTTTGGAGGTCAGAGAGAGTGGAATCGGAGATGGGAGGTGGGTGGAGATGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

155

Amino Acids

16.75

Weight (kDa)

4.46

Isoelectric Point (pI)

21.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	1 - 77	1e-24	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	96, 105
AciI	CCGC	2 cut(s)	138, 234
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	115
AhlI	ACTAGT	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	132, 135, 170
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	325, 397
AvaII	GGWCC	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	119, 147, 157
BccI	CCATC	3 cut(s)	237, 431, 448
BceAI	ACGGC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	4 cut(s)	133, 136, 139, 171
BlsI	GCNGC	4 cut(s)	134, 137, 140, 172
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	32, 325
BmsI	GCATC	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	15, 34
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 238, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	15, 34
BseGI	GGATG	3 cut(s)	39, 248, 257
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	119, 147, 157
BseYI	CCCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	51, 76
BspACI	CCGC	2 cut(s)	138, 234
BspANI	GGCC	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	32, 325
BspMAI	CTGCAG	1 cut(s)	137
BspPI	GGATC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	15, 34
BssMI	GATC	2 cut(s)	51, 76
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	39, 248, 257
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	54, 79
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	51, 76
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 263
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	119, 147, 157
BstXI	CCANNNNNNTGG	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	39, 248, 257
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	2 cut(s)	82, 162
Csp6I	GTAC	1 cut(s)	337
CviJI	RGCY	6 cut(s)	33, 83, 132, 170, 223, 273
CviKI_1	RGCY	6 cut(s)	33, 83, 132, 170, 223, 273
CviQI	GTAC	1 cut(s)	337
DpnI	GATC	2 cut(s)	53, 78
DpnII	GATC	2 cut(s)	51, 76
EaeI	YGGCCR	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	197
FaiI	YATR	1 cut(s)	346
FauI	CCCGC	1 cut(s)	227
FblI	GTMKAC	2 cut(s)	96, 105
Fnu4HI	GCNGC	4 cut(s)	133, 136, 139, 171
FokI	GGATG	3 cut(s)	26, 255, 264
Fsp4HI	GCNGC	4 cut(s)	133, 136, 139, 171
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	4 cut(s)	133, 136, 139, 171
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	83
HgaI	GACGC	2 cut(s)	82, 162
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	2 cut(s)	97, 106
HindII	GTYRAC	2 cut(s)	97, 106
HinfI	GANTC	1 cut(s)	429
HphI	GGTGA	2 cut(s)	325, 397
Hpy166II	GTNNAC	2 cut(s)	97, 106
Hpy188I	TCNGA	4 cut(s)	178, 331, 419, 434
Hpy188III	TCNNGA	2 cut(s)	49, 116
Hpy8I	GTNNAC	2 cut(s)	97, 106
Hpy99I	CGWCG	5 cut(s)	62, 98, 101, 178, 203
HpyAV	CCTTC	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	135, 257, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 263
Hsp92I	GRCGYC	1 cut(s)	93
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	51, 76
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	65, 101, 209
Lsp1109I	GCAGC	3 cut(s)	119, 147, 157
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	53, 78
MboI	GATC	2 cut(s)	51, 76
MboII	GAAGA	2 cut(s)	169, 240
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	182, 396
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	156, 301
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	2 cut(s)	87, 149
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	138, 263
NdeII	GATC	2 cut(s)	51, 76
NlaIV	GGNNCC	2 cut(s)	32, 325
NmuCI	GTSAC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 102
PfeI	GAWTC	1 cut(s)	429
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	134, 137, 140, 172
PspFI	CCCAGC	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	32, 325
PspPI	GGNCC	1 cut(s)	19
PstI	CTGCAG	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SalI	GTCGAC	2 cut(s)	95, 104
SaqAI	TTAA	2 cut(s)	87, 149
SatI	GCNGC	4 cut(s)	133, 136, 139, 171
Sau3AI	GATC	2 cut(s)	51, 76
Sau96I	GGNCC	1 cut(s)	19
SetI	ASST	7 cut(s)	105, 315, 329, 387, 409, 417, 446
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	133
SgrDI	CGTCGACG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	19
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	2 cut(s)	182, 396
SsiI	CCGC	2 cut(s)	138, 234
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	34
TaqI	TCGA	4 cut(s)	57, 75, 96, 105
TasI	AATT	2 cut(s)	182, 396
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	2 cut(s)	87, 149
Tru9I	TTAA	2 cut(s)	87, 149
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	3 cut(s)	132, 135, 170
Tsp45I	GTSAC	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmiI	GTMKAC	2 cut(s)	96, 105
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.