Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

62500759 .. 62501373

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACCAAGCTAAGAGCCCCAGCATCCCTCTCACGATCTTCGATAACCACCCGAAAAATTGATCTGGCCATCGACGGCACCGACGAGGTCGACCCTAATTTGGATTTGGTCAAGGGCCGCGGCGGCACGTTGTTAAGGGAGAAGATGGTGGAGGCCGCGTCGAAGAAGTTCGTGGTGGTTGCTGACGAGACGAAACTGGTGACGGGGATGGGAGGAAGCGGGCTAGCAATGGAAGTCTCACGGGATAGGATAAGTGCTGTAGCACCAGTTGAAAACCAGAAACAGCTCAATCGGGATTCTGAAGCTCAACATGTGTGTGTTGATGAGCCATTACCTTTTACACAGGTTGCAGGTAATCCTACCCCTACTCTGGAGTTTGTTAAAGAGCCAATGCTTTTAACACAGGTTGTTGGCAATATTACTCCTCCTCTGGAGTCTTGTGAAATGCAACAGACCATTGAGTCGCTTGTTGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

160

Amino Acids

17.1

Weight (kDa)

4.96

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	17 - 88	1.4e-23	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	120, 158
AciI	CCGC	5 cut(s)	118, 120, 123, 156, 219
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	100, 370
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	3 cut(s)	10, 286, 305
AluI	AGCT	3 cut(s)	10, 286, 305
Alw26I	GTCTC	2 cut(s)	182, 241
AoxI	GGCC	3 cut(s)	66, 115, 153
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	19
BccI	CCATC	3 cut(s)	77, 139, 202
BceAI	ACGGC	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	182, 241
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	4 cut(s)	118, 121, 124, 156
BlsI	GCNGC	4 cut(s)	119, 122, 125, 157
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	32
BmtI	GCTAGC	1 cut(s)	227
BpmI	CTGGAG	2 cut(s)	392, 452
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 370
Bse1I	ACTGG	2 cut(s)	201, 266
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	23, 213
BseLI	CCNNNNNNNGG	2 cut(s)	100, 370
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	201, 266
BseRI	GAGGAG	2 cut(s)	414, 417
BseYI	CCCAGC	1 cut(s)	19
Bsh1236I	CGCG	2 cut(s)	120, 158
BshFI	GGCC	3 cut(s)	68, 117, 155
BshNI	GGYRCC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	100, 370
BsmAI	GTCTC	2 cut(s)	182, 241
BsmBI	CGTCTC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	68, 117, 155
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	35, 61
BspACI	CCGC	5 cut(s)	118, 120, 123, 156, 219
BspANI	GGCC	3 cut(s)	68, 117, 155
BspFNI	CGCG	2 cut(s)	120, 158
BspLI	GGNNCC	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	341
BspOI	GCTAGC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	201, 266
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	35, 61
BstC8I	GCNNGC	2 cut(s)	221, 225
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	23, 213
BstFNI	CGCG	2 cut(s)	120, 158
BstKTI	GATC	2 cut(s)	38, 64
BstMAI	GTCTC	2 cut(s)	182, 241
BstMBI	GATC	2 cut(s)	35, 61
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	2 cut(s)	120, 158
BsuRI	GGCC	3 cut(s)	68, 117, 155
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	23, 213
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	221, 225
Cfr13I	GGNCC	1 cut(s)	115
Cfr42I	CCGCGG	1 cut(s)	121
CseI	GACGC	1 cut(s)	147
CviAII	CATG	1 cut(s)	311
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	37, 63
DpnII	GATC	2 cut(s)	35, 61
DrdI	GACNNNNNNGTC	1 cut(s)	460
DseDI	GACNNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	1 cut(s)	314
FaiI	YATR	1 cut(s)	312
FatI	CATG	1 cut(s)	310
FauI	CCCGC	1 cut(s)	212
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	118, 121, 124, 156
FokI	GGATG	2 cut(s)	10, 220
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	4 cut(s)	118, 121, 124, 156
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	4 cut(s)	118, 121, 124, 156
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	2 cut(s)	392, 452
HaeIII	GGCC	3 cut(s)	68, 117, 155
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	296, 434, 461
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	33, 293, 371, 431
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	3 cut(s)	77, 86, 163
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	350, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	314
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	35, 61
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	37, 63
MboI	GATC	2 cut(s)	35, 61
MboII	GAAGA	3 cut(s)	30, 154, 175
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	2 cut(s)	57, 97
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	443, 470
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	6 cut(s)	38, 79, 145, 206, 435, 438
Mox20I	TGGCCA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	3 cut(s)	134, 381, 398
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	120
MvnI	CGCG	2 cut(s)	120, 158
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	2 cut(s)	35, 61
NheI	GCTAGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	314
PciI	ACATGT	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 81
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	119, 122, 125, 157
PleI	GAGTC	2 cut(s)	442, 469
PpsI	GAGTC	2 cut(s)	442, 469
PscI	ACATGT	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	315
SacII	CCGCGG	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	134, 381, 398
SatI	GCNGC	4 cut(s)	118, 121, 124, 156
Sau3AI	GATC	2 cut(s)	35, 61
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	443, 470
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	9 cut(s)	12, 90, 131, 288, 307, 337, 348, 355, 408
SfaNI	GCATC	1 cut(s)	32
SfcI	CTRYAG	1 cut(s)	258
Sfr303I	CCGCGG	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	57, 97
SsiI	CCGC	5 cut(s)	118, 120, 123, 156, 219
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	1 cut(s)	224
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	4 cut(s)	41, 72, 90, 161
TasI	AATT	2 cut(s)	57, 97
TauI	GCSGC	4 cut(s)	120, 123, 126, 158
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	134, 381, 398
Tru9I	TTAA	3 cut(s)	134, 381, 398
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	86
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.