FvH4_6g03160

Ribose-5-phosphate isomerase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
1763556 .. 1764774
1219 bp
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UTR
Exon/CDS
Intron
FvH4_6g03160.t1

Sequence Viewer

Length: 816 bp
ATGGCTTCCTCCCTATCCCTCATCTCCCCCCACTCCGCTATCCTGCGCACCCCCAAAACCCTTAACCTGCGCACCCACCGCCCTCTCTGCATCAAAGCCCGCACCGTCCCCGCCCTCACCCAAGACGACCTCAAGAAGCTCGCCGCCGACAAGGCCGTCGAGTACGTCAAGTCCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTCGTCTCCAAGCTCGGCGAGCTTCTCAAATCCGGCGAACTCACCGACATCGTCGGCGTCCCGACCTCAAAACGAACCGAGGACCAAGCCCGCAGCCTCGGGATCCCTCTCTCGATCCTCGACGACCACCCGAGGATCGACCTCGCCATCGACGGCGCCGACGAGGTCGACCCCAATCTTGACCTGGTCAAAGGCCGCGGCGGCGCGTTGCTGAGGGAGAAGATGGTGGAGGCGGCGTCGGAGAAGTTCGTTGTCGTCGCCGACGAGACGAAGCTGGTGACGGGGCTCGGAGGGAGCGGGCTGGCAATGCCGGTGGAGGTGGTGCAGTTTTGCTGGAAGTATAATCTGATCAGGCTGCAGGAGCTGTTTAAAGAAGAAGGCGTCGAGGCTAAGCTGAGGATGGAGGGGGACACACCGTATGTGACGGATAATTACAACTACATTGTGGACTTGTACTTCAAGACTCCGATTAAAGATGGGCCTGCGGCCGGGAAGGAGATTTCAGTGCTCGAGGGGGTTGTGGAGCACGGGCTGTTTTTGAATATGGCCACCGCGGTGATCATTGCCGGGAAGGAAGGAGTGGAGGTGATGAACAAGTGA

Protein Analysis

272

Amino Acids

29.2

Weight (kDa)

5.53

Isoelectric Point (pI)

23.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 90 - 265 5.6e-61 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
Acc16I TGCGCA 2 cut(s) 47, 71
Acc36I ACCTGC 1 cut(s) 75
AccB1I GGYRCC 2 cut(s) 194, 371
AccBSI CCGCTC 1 cut(s) 513
AccI GTMKAC 1 cut(s) 384
AccII CGCG 3 cut(s) 414, 422, 770
AclWI GGATC 4 cut(s) 313, 325, 326, 359
AcoI YGGCCR 2 cut(s) 702, 762
AcyI GRCGYC 4 cut(s) 273, 372, 452, 597
AfaI GTAC 2 cut(s) 164, 671
AfiI CCNNNNNNNGG 1 cut(s) 704
AgsI TTSAA 2 cut(s) 676, 757
AjnI CCWGG 1 cut(s) 399
AleI CACNNNNGTG 1 cut(s) 770
AluBI AGCT 6 cut(s) 139, 229, 238, 490, 580, 610
AluI AGCT 6 cut(s) 139, 229, 238, 490, 580, 610
Alw21I GWGCWC 2 cut(s) 726, 744
Alw26I GTCTC 2 cut(s) 226, 476
AlwI GGATC 4 cut(s) 313, 325, 326, 359
AlwNI CAGNNNCTG 1 cut(s) 580
Ama87I CYCGRG 3 cut(s) 314, 346, 725
AoxI GGCC 6 cut(s) 153, 187, 409, 695, 702, 762
ApeKI GCWGC 2 cut(s) 309, 571
AspLEI GCGC 4 cut(s) 48, 72, 374, 422
AspS9I GGNCC 3 cut(s) 181, 298, 695
AsuC2I CCSGG 2 cut(s) 706, 784
AsuHPI GGTGA 5 cut(s) 109, 250, 505, 784, 814
AvaI CYCGRG 3 cut(s) 314, 346, 725
AvaII GGWCC 2 cut(s) 181, 298
BalI TGGCCA 1 cut(s) 764
BamHI GGATCC 1 cut(s) 318
BanI GGYRCC 2 cut(s) 194, 371
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 2 cut(s) 726, 744
BbvCI CCTCAGC 2 cut(s) 428, 611
BbvI GCAGC 2 cut(s) 321, 558
BccI CCATC 4 cut(s) 371, 433, 610, 686
BceAI ACGGC 2 cut(s) 140, 385
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 401
BclI TGATCA 2 cut(s) 564, 774
BcnI CCSGG 2 cut(s) 706, 784
BcoDI GTCTC 2 cut(s) 226, 476
BfmI CTRYAG 1 cut(s) 572
BfoI RGCGCY 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 75
BglI GCCNNNNNGGC 2 cut(s) 152, 417
BisI GCNGC 9 cut(s) 144, 210, 310, 412, 415, 418, 450, 572, 702
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 9 cut(s) 145, 211, 311, 413, 416, 419, 451, 573, 703
Bme1390I CCNGG 3 cut(s) 401, 706, 784
Bme18I GGWCC 2 cut(s) 181, 298
BmeT110I CYCGRG 3 cut(s) 314, 346, 725
BmgT120I GGNCC 3 cut(s) 181, 298, 695
BmiI GGNNCC 4 cut(s) 196, 202, 320, 373
BmrFI CCNGG 3 cut(s) 401, 706, 784
BmsI GCATC 1 cut(s) 99
Bpu10I CCTNAGC 2 cut(s) 428, 611
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 706, 784
BsaHI GRCGYC 4 cut(s) 273, 372, 452, 597
BsaJI CCNNGG 7 cut(s) 184, 190, 294, 313, 347, 412, 768
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 786, 816
Bsc4I CCNNNNNNNGG 1 cut(s) 704
Bse118I RCCGGY 2 cut(s) 197, 526
Bse3DI GCAATG 2 cut(s) 528, 777
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 7 cut(s) 184, 190, 294, 313, 347, 412, 768
BseGI GGATG 1 cut(s) 621
BseLI CCNNNNNNNGG 1 cut(s) 704
BseMI GCAATG 2 cut(s) 528, 777
BseMII CTCAG 2 cut(s) 419, 602
BseX3I CGGCCG 1 cut(s) 702
BseXI GCAGC 2 cut(s) 321, 558
BsgI GTGCAG 1 cut(s) 560
Bsh1236I CGCG 3 cut(s) 414, 422, 770
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 6 cut(s) 155, 189, 411, 697, 704, 764
BshNI GGYRCC 2 cut(s) 194, 371
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 2 cut(s) 726, 744
BsiHKCI CYCGRG 3 cut(s) 314, 346, 725
BsiSI CCGG 6 cut(s) 174, 198, 249, 527, 705, 783
BslFI GGGAC 3 cut(s) 92, 260, 638
BslI CCNNNNNNNGG 1 cut(s) 704
BsmAI GTCTC 2 cut(s) 226, 476
BsmBI CGTCTC 2 cut(s) 226, 476
BsmFI GGGAC 3 cut(s) 92, 260, 638
BsnI GGCC 6 cut(s) 155, 189, 411, 697, 704, 764
BsoBI CYCGRG 3 cut(s) 314, 346, 725
Bsp1286I GDGCHC 3 cut(s) 504, 726, 744
Bsp143I GATC 5 cut(s) 318, 330, 351, 564, 774
Bsp1720I GCTNAGC 1 cut(s) 606
BspANI GGCC 6 cut(s) 155, 189, 411, 697, 704, 764
BspCNI CTCAG 2 cut(s) 420, 603
BspFNI CGCG 3 cut(s) 414, 422, 770
BspLI GGNNCC 4 cut(s) 196, 202, 320, 373
BspMAI CTGCAG 1 cut(s) 576
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 4 cut(s) 313, 325, 326, 359
BspT107I GGYRCC 2 cut(s) 194, 371
BsrBI CCGCTC 1 cut(s) 513
BsrDI GCAATG 2 cut(s) 528, 777
BsrFI RCCGGY 2 cut(s) 197, 526
BssAI RCCGGY 2 cut(s) 197, 526
BssECI CCNNGG 7 cut(s) 184, 190, 294, 313, 347, 412, 768
BssMI GATC 5 cut(s) 318, 330, 351, 564, 774
BssNI GRCGYC 4 cut(s) 273, 372, 452, 597
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 106, 633
BstACI GRCGYC 4 cut(s) 273, 372, 452, 597
BstC8I GCNNGC 7 cut(s) 100, 141, 236, 307, 515, 519, 699
BstDEI CTNAG 3 cut(s) 428, 606, 611
BstDSI CCRYGG 2 cut(s) 412, 768
BstF5I GGATG 1 cut(s) 621
BstFNI CGCG 3 cut(s) 414, 422, 770
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 4 cut(s) 48, 72, 374, 422
BstKTI GATC 5 cut(s) 321, 333, 354, 567, 777
BstMAI GTCTC 2 cut(s) 226, 476
BstMBI GATC 5 cut(s) 318, 330, 351, 564, 774
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 7 cut(s) 78, 87, 152, 235, 417, 523, 577
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 3 cut(s) 399, 704, 782
BstSFI CTRYAG 1 cut(s) 572
BstUI CGCG 3 cut(s) 414, 422, 770
BstV1I GCAGC 2 cut(s) 321, 558
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BstZI CGGCCG 1 cut(s) 702
BsuRI GGCC 6 cut(s) 155, 189, 411, 697, 704, 764
BtgI CCRYGG 2 cut(s) 412, 768
BtsCI GGATG 1 cut(s) 621
BtsIMutI CAGTG 1 cut(s) 726
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 7 cut(s) 100, 141, 236, 307, 515, 519, 699
CaiI CAGNNNCTG 1 cut(s) 580
CfoI GCGC 4 cut(s) 48, 72, 374, 422
Cfr10I RCCGGY 2 cut(s) 197, 526
Cfr13I GGNCC 3 cut(s) 181, 298, 695
Cfr42I CCGCGG 2 cut(s) 415, 771
CseI GACGC 3 cut(s) 262, 441, 586
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 2 cut(s) 163, 670
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviAII CATG 1 cut(s) 178
CviQI GTAC 2 cut(s) 163, 670
DdeI CTNAG 3 cut(s) 428, 606, 611
DinI GGCGCC 1 cut(s) 373
DpnI GATC 5 cut(s) 320, 332, 353, 566, 776
DpnII GATC 5 cut(s) 318, 330, 351, 564, 774
DraI TTTAAA 1 cut(s) 586
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 2 cut(s) 702, 762
EagI CGGCCG 1 cut(s) 702
EclXI CGGCCG 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 181, 298
Eco52I CGGCCG 1 cut(s) 702
Eco88I CYCGRG 3 cut(s) 314, 346, 725
EcoRII CCWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 504
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
Esp3I CGTCTC 2 cut(s) 226, 476
FaeI CATG 1 cut(s) 181
FaiI YATR 4 cut(s) 179, 558, 636, 761
FaqI GGGAC 3 cut(s) 92, 260, 638
FatI CATG 1 cut(s) 177
FauI CCCGC 4 cut(s) 107, 118, 314, 506
FbaI TGATCA 2 cut(s) 564, 774
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 9 cut(s) 144, 210, 310, 412, 415, 418, 450, 572, 702
FokI GGATG 1 cut(s) 628
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 9 cut(s) 144, 210, 310, 412, 415, 418, 450, 572, 702
FspI TGCGCA 2 cut(s) 47, 71
GlaI GCGC 4 cut(s) 47, 71, 373, 421
GluI GCNGC 9 cut(s) 144, 210, 310, 412, 415, 418, 450, 572, 702
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 6 cut(s) 155, 189, 411, 697, 704, 764
HapII CCGG 6 cut(s) 174, 198, 249, 527, 705, 783
HgaI GACGC 3 cut(s) 262, 441, 586
HhaI GCGC 4 cut(s) 48, 72, 374, 422
Hin1I GRCGYC 4 cut(s) 273, 372, 452, 597
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 4 cut(s) 46, 70, 372, 420
HinP1I GCGC 4 cut(s) 46, 70, 372, 420
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 1 cut(s) 679
HpaII CCGG 6 cut(s) 174, 198, 249, 527, 705, 783
HphI GGTGA 5 cut(s) 109, 250, 505, 784, 814
Hpy166II GTNNAC 2 cut(s) 385, 664
Hpy188I TCNGA 4 cut(s) 457, 506, 564, 684
Hpy188III TCNNGA 6 cut(s) 133, 277, 316, 328, 395, 676
Hpy8I GTNNAC 2 cut(s) 385, 664
HpyAV CCTTC 5 cut(s) 223, 587, 703, 781, 785
HpyCH4III ACNGT 2 cut(s) 106, 633
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 90, 541, 574
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 87, 152, 235, 417, 523, 577
HpyF3I CTNAG 3 cut(s) 428, 606, 611
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 4 cut(s) 273, 372, 452, 597
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 4 cut(s) 46, 70, 372, 420
KasI GGCGCC 1 cut(s) 371
Ksp22I TGATCA 2 cut(s) 564, 774
KspI CCGCGG 2 cut(s) 415, 771
Kzo9I GATC 5 cut(s) 318, 330, 351, 564, 774
LmnI GCTCC 4 cut(s) 206, 510, 577, 739
Lsp1109I GCAGC 2 cut(s) 321, 558
LweI GCATC 1 cut(s) 99
MabI ACCWGGT 1 cut(s) 399
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 493, 637
MalI GATC 5 cut(s) 320, 332, 353, 566, 776
MbiI CCGCTC 1 cut(s) 513
MboI GATC 5 cut(s) 318, 330, 351, 564, 774
MboII GAAGA 2 cut(s) 448, 602
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 3 cut(s) 504, 726, 744
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 1 cut(s) 646
MluNI TGGCCA 1 cut(s) 764
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 1 cut(s) 673
MmeI TCCRAC 1 cut(s) 435
Mox20I TGGCCA 1 cut(s) 764
MscI TGGCCA 1 cut(s) 764
MseI TTAA 3 cut(s) 63, 585, 687
MslI CAYNNNNRTG 1 cut(s) 770
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 2 cut(s) 414, 770
MspI CCGG 6 cut(s) 174, 198, 249, 527, 705, 783
MspR9I CCNGG 3 cut(s) 401, 706, 784
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 3 cut(s) 414, 422, 770
MwoI GCNNNNNNNGC 7 cut(s) 78, 87, 152, 235, 417, 523, 577
NarI GGCGCC 1 cut(s) 372
NciI CCSGG 2 cut(s) 706, 784
NdeII GATC 5 cut(s) 318, 330, 351, 564, 774
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 4 cut(s) 196, 202, 320, 373
NmeAIII GCCGAG 3 cut(s) 165, 171, 210
NmuCI GTSAC 2 cut(s) 493, 637
NsbI TGCGCA 2 cut(s) 47, 71
OliI CACNNNNGTG 1 cut(s) 770
PaeR7I CTCGAG 1 cut(s) 725
PcsI WCGNNNNNNNCGW 3 cut(s) 372, 375, 477
PflFI GACNNNGTC 3 cut(s) 266, 380, 401
PkrI GCNGC 9 cut(s) 145, 211, 311, 413, 416, 419, 451, 573, 703
PleI GAGTC 1 cut(s) 673
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 4 cut(s) 196, 202, 320, 373
PspPI GGNCC 3 cut(s) 181, 298, 695
PspXI VCTCGAGB 1 cut(s) 725
PstI CTGCAG 1 cut(s) 576
PstNI CAGNNNCTG 1 cut(s) 580
PsuI RGATCY 1 cut(s) 318
PsyI GACNNNGTC 3 cut(s) 266, 380, 401
RsaI GTAC 2 cut(s) 164, 671
RsaNI GTAC 2 cut(s) 163, 670
RseI CAYNNNNRTG 1 cut(s) 770
SacII CCGCGG 2 cut(s) 415, 771
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 63, 585, 687
SatI GCNGC 9 cut(s) 144, 210, 310, 412, 415, 418, 450, 572, 702
Sau3AI GATC 5 cut(s) 318, 330, 351, 564, 774
Sau96I GGNCC 3 cut(s) 181, 298, 695
SchI GAGTC 1 cut(s) 673
ScrFI CCNGG 3 cut(s) 401, 706, 784
SduI GDGCHC 3 cut(s) 504, 726, 744
SexAI ACCWGGT 1 cut(s) 399
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 572
SfoI GGCGCC 1 cut(s) 373
Sfr274I CTCGAG 1 cut(s) 725
Sfr303I CCGCGG 2 cut(s) 415, 771
SgrBI CCGCGG 2 cut(s) 415, 771
SinI GGWCC 2 cut(s) 181, 298
SlaI CTCGAG 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 131, 725
SmoI CTYRAG 2 cut(s) 131, 725
Sse9I AATT 1 cut(s) 646
SspDI GGCGCC 1 cut(s) 371
StyD4I CCNGG 3 cut(s) 399, 704, 782
TaaI ACNGT 2 cut(s) 106, 633
TaiI ACGT 1 cut(s) 168
TaqI TCGA 8 cut(s) 159, 329, 336, 354, 366, 384, 600, 726
TasI AATT 1 cut(s) 646
TatI WGTACW 1 cut(s) 669
TauI GCSGC 7 cut(s) 146, 212, 414, 417, 420, 452, 704
Tru1I TTAA 3 cut(s) 63, 585, 687
Tru9I TTAA 3 cut(s) 63, 585, 687
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 2 cut(s) 493, 637
TseI GCWGC 2 cut(s) 309, 571
Tsp45I GTSAC 2 cut(s) 493, 637
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 1 cut(s) 726
Tth111I GACNNNGTC 3 cut(s) 266, 380, 401
VpaK11BI GGWCC 2 cut(s) 181, 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 725
XmiI GTMKAC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.