Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

5403755 .. 5404882

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0042600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTGGATAGAATTAGCAATTTGCCAGATGATGTCACGGAAAAGATTGTATCACGTTTGCCGCTTAGGGAGGCAACAAGAACAAGTGTCTTGTCCAGCAAGTGGAGTCCTCTGCTTAAGAGAATAACAGCGCGACATTGTGATGGTTTCACCAATCTCAAGATCGATGCACCAAATCTCGAGTCTATTAACATTTTAGGTGTGTTTAAAGATGTTGACCTTGTAAATACCTCAAATGTTGCTTATGCTTCAATTGATTTGGACATCAAGGTGGACCAAATACAGGGTCCGGGTAGTTCTAGCAATTTGGTCAAGGTTTTAAATCACCTGCCTCGTATTCGAAGGCTCTCTATTAAGAGGTACTTTTTGAAGTATTTGTCTATTGGTGCCTTGCCGGAGAAGCTTTCTAACCCATGTCAATATCTGAGTGTTCTTTCTTTGGACATCAGCTTCATGTTAGATAAACACTATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

158

Amino Acids

17.81

Weight (kDa)

9.3

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 38	1.4e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccII	CGCG	1 cut(s)	133
AciI	CCGC	1 cut(s)	62
AdeI	CACNNNGTG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	102, 283
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	252, 370
AluBI	AGCT	2 cut(s)	403, 450
AluI	AGCT	2 cut(s)	403, 450
Ama87I	CYCGRG	1 cut(s)	179
ArsI	GACNNNNNNTTYG	4 cut(s)	167, 199, 271, 303
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	274, 287
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	142, 317
AsuII	TTCGAA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	2 cut(s)	274, 287
BanI	GGYRCC	1 cut(s)	386
BccI	CCATC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	274, 287
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	274, 287
BmiI	GGNNCC	2 cut(s)	288, 388
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 283
BseCI	ATCGAT	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	102, 283
BseMII	CTCAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	386
BshVI	ATCGAT	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	290, 395
BslI	CCNNNNNNNGG	2 cut(s)	102, 283
BsoBI	CYCGRG	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	417
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	288, 388
BspMI	ACCTGC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	386
BspTI	CTTAAG	1 cut(s)	116
BssMI	GATC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	65, 425
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	274, 287
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	414, 454
CviJI	RGCY	3 cut(s)	346, 403, 450
CviKI_1	RGCY	3 cut(s)	346, 403, 450
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	65, 425
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DraI	TTTAAA	2 cut(s)	208, 321
DraIII	CACNNNGTG	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	274, 287
Eco88I	CYCGRG	1 cut(s)	179
FaeI	CATG	2 cut(s)	417, 457
FaiI	YATR	4 cut(s)	246, 415, 455, 471
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	2 cut(s)	413, 453
Fnu4HI	GCNGC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	62
HapII	CCGG	2 cut(s)	290, 395
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	417, 457
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	106, 182
HpaII	CCGG	2 cut(s)	290, 395
HphI	GGTGA	2 cut(s)	142, 317
Hpy166II	GTNNAC	2 cut(s)	217, 274
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	2 cut(s)	160, 179
Hpy8I	GTNNAC	2 cut(s)	217, 274
HpyAV	CCTTC	1 cut(s)	336
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	2 cut(s)	65, 425
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	417, 457
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	162
LpnPI	CCDG	6 cut(s)	39, 109, 269, 303, 341, 408
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MfeI	CAATTG	1 cut(s)	252
MluCI	AATT	4 cut(s)	12, 19, 252, 304
MlyI	GAGTC	2 cut(s)	115, 191
MnlI	CCTC	5 cut(s)	64, 120, 241, 342, 351
MseI	TTAA	5 cut(s)	117, 189, 207, 320, 354
MslI	CAYNNNNRTG	2 cut(s)	141, 269
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	290, 395
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	400
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	417, 457
NlaIV	GGNNCC	2 cut(s)	288, 388
NmuCI	GTSAC	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	179
PaqCI	CACCTGC	1 cut(s)	336
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	114, 190
PpsI	GAGTC	2 cut(s)	114, 190
PspN4I	GGNNCC	2 cut(s)	288, 388
PspPI	GGNCC	2 cut(s)	274, 287
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	2 cut(s)	141, 269
SaqAI	TTAA	5 cut(s)	117, 189, 207, 320, 354
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	2 cut(s)	274, 287
SchI	GAGTC	2 cut(s)	115, 191
ScrFI	CCNGG	1 cut(s)	291
SfaNI	GCATC	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	179
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	2 cut(s)	274, 287
SlaI	CTCGAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	141, 269
SmlI	CTYRAG	3 cut(s)	116, 158, 179
SmoI	CTYRAG	3 cut(s)	116, 158, 179
Sse9I	AATT	4 cut(s)	12, 19, 252, 304
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	289
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	165, 180, 340
TasI	AATT	4 cut(s)	12, 19, 252, 304
TauI	GCSGC	1 cut(s)	64
Tru1I	TTAA	5 cut(s)	117, 189, 207, 320, 354
Tru9I	TTAA	5 cut(s)	117, 189, 207, 320, 354
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	442
TspGWI	ACGGA	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	102
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	274, 287
XhoI	CTCGAG	1 cut(s)	179
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.