Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

65064713 .. 65065596

Gene Structure 884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035331

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTCAAGGGCCGCGGCAGGACGTTGTTAAAGGAGAAGATGGTAGAGGCCGCGTCAGAGAAGTTCATGGCGGTCGCCGCCGAGACGAAACTAGTGACGGGGCTAGGAGGAAGCGGGCTGGCAATGGTTGTTCTTGAATATGGTGACGGCGGTGATCATTGCAGGGAAGGATGGAGTGGATGTGCAGACCAAGTGATTGGCTTTTTTTGGGATTTTGGTGGTGGTGGTGTGGAGGTGAGGGCTGGAACCTCTGATTTGTACTTGTTATGCGTTGTGCAAAATGTTTATTGGTGTATTGTTAGAATGGTGAAATGGATAATTGATAGAGGTTTGGAGGGGTTGAGGGAGAATCGGTCAGGTTTCAAGGCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

125

Amino Acids

13.55

Weight (kDa)

6.57

Isoelectric Point (pI)

13.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	1 - 46	1e-08	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	15, 53
AciI	CCGC	7 cut(s)	13, 15, 51, 71, 78, 114, 150
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	137, 364
AhlI	ACTAGT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	3 cut(s)	10, 48, 366
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	4 cut(s)	155, 164, 247, 319
BccI	CCATC	2 cut(s)	34, 165
BceAI	ACGGC	1 cut(s)	163
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	77
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 104
BisI	GCNGC	4 cut(s)	13, 16, 51, 78
BlsI	GCNGC	4 cut(s)	14, 17, 52, 79
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 338, 368
Bse3DI	GCAATG	2 cut(s)	129, 157
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	2 cut(s)	176, 185
BseMI	GCAATG	2 cut(s)	129, 157
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	2 cut(s)	15, 53
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	12, 50, 368
BsiEI	CGRYCG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsnI	GGCC	3 cut(s)	12, 50, 368
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	7 cut(s)	13, 15, 51, 71, 78, 114, 150
BspANI	GGCC	3 cut(s)	12, 50, 368
BspFNI	CGCG	2 cut(s)	15, 53
BspLI	GGNNCC	1 cut(s)	247
BsrDI	GCAATG	2 cut(s)	129, 157
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	116, 120
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	176, 185
BstFNI	CGCG	2 cut(s)	15, 53
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstUI	CGCG	2 cut(s)	15, 53
BstXI	CCANNNNNNTGG	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	12, 50, 368
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	176, 185
Cac8I	GCNNGC	2 cut(s)	116, 120
Cfr13I	GGNCC	1 cut(s)	10
Cfr42I	CCGCGG	1 cut(s)	16
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	7 cut(s)	12, 50, 103, 118, 201, 242, 368
CviKI_1	RGCY	7 cut(s)	12, 50, 103, 118, 201, 242, 368
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	68, 141, 268
FatI	CATG	1 cut(s)	66
FauI	CCCGC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	13, 16, 51, 78
FokI	GGATG	2 cut(s)	183, 192
Fsp4HI	GCNGC	4 cut(s)	13, 16, 51, 78
FspBI	CTAG	2 cut(s)	92, 104
GluI	GCNGC	4 cut(s)	13, 16, 51, 78
HaeIII	GGCC	3 cut(s)	12, 50, 368
HgaI	GACGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	4 cut(s)	155, 164, 247, 319
Hpy188I	TCNGA	2 cut(s)	58, 253
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	162, 185, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	154
KspI	CCGCGG	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	4, 104, 148, 228, 342
MaeI	CTAG	2 cut(s)	92, 104
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	94, 143
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	49
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	8 cut(s)	40, 101, 226, 231, 259, 320, 328, 336
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	15
MvnI	CGCG	2 cut(s)	15, 53
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	94, 143
PceI	AGGCCT	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	14, 17, 52, 79
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacII	CCGCGG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	4 cut(s)	13, 16, 51, 78
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	10
SetI	ASST	5 cut(s)	26, 237, 251, 331, 361
Sfr303I	CCGCGG	1 cut(s)	16
SgrBI	CCGCGG	1 cut(s)	16
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	1 cut(s)	318
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	7 cut(s)	13, 15, 51, 71, 78, 114, 150
SspMI	CTAG	2 cut(s)	92, 104
StuI	AGGCCT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	26
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	4 cut(s)	15, 18, 53, 80
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseFI	GTSAC	2 cut(s)	94, 143
Tsp45I	GTSAC	2 cut(s)	94, 143
TspDTI	ATGAA	1 cut(s)	55
XspI	CTAG	2 cut(s)	92, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.