Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

45498690 .. 45499208

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCAAAACGAACCGAGGACCAAGCTAGGAGCCTCGACATCCCTCTCTCCATCCTCGATGACCACCTGAAAATCGATCTGGCCATCTACGGCGCCGACGAGAGCGTTATTAAAGGAGAAGATGGTGGAGGCCACGTTGGAGAAGTTCGTGGTGGTCGCCGACGAGACAAAATTAGTGACGAGGCTGGGAGGAAGCGGGCTGGCAATGGGGAAGGATGGAGTGGATGTGCAGACCAAGTGATTGGCTCTTTTTGGGATTTTGGTGGTGGTGATGGTGGTGTGGAGAGGTTTGGAAGTTGGAGAGAGTGGAATCGGAGATGGGAGGTGGGTGGAGAGACGTGGGTGGAGATGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

120

Amino Acids

13.17

Weight (kDa)

4.82

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	93
AjiI	CACGTC	1 cut(s)	339
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	159, 329
AoxI	GGCC	2 cut(s)	81, 130
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	92
BccI	CCATC	7 cut(s)	59, 92, 116, 210, 266, 312, 343
BceAI	ACGGC	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	159, 329
BfaI	CTAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	32, 94
Bsa29I	ATCGAT	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 211, 241
Bse3DI	GCAATG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	4 cut(s)	39, 51, 221, 230
BseMI	GCAATG	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	83, 132
BshNI	GGYRCC	1 cut(s)	92
BshVI	ATCGAT	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	159, 329
BsmBI	CGTCTC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	83, 132
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	83, 132
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	32, 94
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	76
BssNI	GRCGYC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	198, 202
BstF5I	GGATG	4 cut(s)	39, 51, 221, 230
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	159, 329
BstMBI	GATC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	83, 132
BsuTUI	ATCGAT	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	339
BtsCI	GGATG	4 cut(s)	39, 51, 221, 230
Cac8I	GCNNGC	2 cut(s)	198, 202
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	75
CviJI	RGCY	7 cut(s)	26, 33, 83, 132, 185, 200, 246
CviKI_1	RGCY	7 cut(s)	26, 33, 83, 132, 185, 200, 246
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	19
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	329
FauI	CCCGC	1 cut(s)	189
FokI	GGATG	4 cut(s)	26, 38, 228, 237
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	94
GsaI	CCCAGC	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	83, 132
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	315
Hpy99I	CGWCG	2 cut(s)	101, 165
HpyAV	CCTTC	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	135, 338
HpyCH4V	TGCA	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	135, 338
Hsp92I	GRCGYC	1 cut(s)	93
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	65, 80, 171, 186
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	135, 338
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	93
MmeI	TCCRAC	2 cut(s)	118, 278
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	83
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	32, 94
NmuCI	GTSAC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	310
PluTI	GGCGCC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	32, 94
PspPI	GGNCC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	19
SetI	ASST	6 cut(s)	28, 69, 138, 290, 327, 341
SfoI	GGCGCC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	196
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	27
TaiI	ACGT	2 cut(s)	138, 341
TaqI	TCGA	3 cut(s)	36, 57, 75
TasI	AATT	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	19
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.