Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

78520269 .. 78520751

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG501000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATTGACACTAACCCAGCCACCAGTCCTTGCCATCTTGCTTCCTCCAATTCCAGCAACTCCTCCATCTCCACCCACCTCCTCTCCAGTTACCCTCAGATCAACCCAATACTCAATCCCAACCCATCTCTTATTCGGTCATCAAAAGAAACCCATCTCCGATTCCACTCTCTCCGACCTCCAAACCCTCTTCGTCTCCAAGCTCGGCGAGCTCATCAAATCCGGCGAGTCCCGACGTCAAAACGAACCGAGGACCAAGCTATGAGCCTCGGCATCCCTCACTCGATCCTCGACGACCACCCGAAAATCGATCTGGCCATCGACAGCGCCGACCCCAATCTGGATTTGGTCAAGGGCAGCGGCGGCGCGTTGTTAAAGGAGAAGATGGTGGAGGCCGCGTCGGAGAAGTTCGTGGTGGTCGCCGACGAGACAAAATTGGTGACGGGGCTGGGAGGAAGCGGGCTGGCAATGAGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

160

Amino Acids

17.19

Weight (kDa)

8.67

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	77 - 153	9.8e-24	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccII	CGCG	2 cut(s)	368, 398
AciI	CCGC	4 cut(s)	360, 363, 396, 459
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	340
AluBI	AGCT	3 cut(s)	203, 212, 260
AluI	AGCT	3 cut(s)	203, 212, 260
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	200, 422
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	2 cut(s)	315, 393
ApeKI	GCWGC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	329, 368
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	6 cut(s)	42, 74, 133, 162, 326, 379
BcoDI	GTCTC	2 cut(s)	200, 422
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	4 cut(s)	358, 361, 364, 396
BlsI	GCNGC	4 cut(s)	359, 362, 365, 397
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	249, 268
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	24, 87
Bse3DI	GCAATG	1 cut(s)	474
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	249, 268
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	24, 87
BseRI	GAGGAG	2 cut(s)	52, 71
BseXI	GCAGC	1 cut(s)	369
BseYI	CCCAGC	2 cut(s)	16, 448
Bsh1236I	CGCG	2 cut(s)	368, 398
BshFI	GGCC	2 cut(s)	317, 395
BshVI	ATCGAT	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	2 cut(s)	200, 422
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	317, 395
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	99, 285, 310
BspACI	CCGC	4 cut(s)	360, 363, 396, 459
BspANI	GGCC	2 cut(s)	317, 395
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	2 cut(s)	368, 398
BspPI	GGATC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	24, 87
BssECI	CCNNGG	2 cut(s)	249, 268
BssMI	GATC	3 cut(s)	99, 285, 310
BssNI	GRCGYC	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	210, 461, 465
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	2 cut(s)	368, 398
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	2 cut(s)	329, 368
BstKTI	GATC	3 cut(s)	102, 288, 313
BstMAI	GTCTC	2 cut(s)	200, 422
BstMBI	GATC	3 cut(s)	99, 285, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 363
BstUI	CGCG	2 cut(s)	368, 398
BstV1I	GCAGC	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	317, 395
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	273
Cac8I	GCNNGC	3 cut(s)	210, 461, 465
CfoI	GCGC	2 cut(s)	329, 368
Cfr13I	GGNCC	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	387
CviJI	RGCY	9 cut(s)	20, 203, 212, 260, 267, 317, 395, 448, 463
CviKI_1	RGCY	9 cut(s)	20, 203, 212, 260, 267, 317, 395, 448, 463
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	101, 287, 312
DpnII	GATC	3 cut(s)	99, 285, 310
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	200
FaiI	YATR	1 cut(s)	263
FaqI	GGGAC	1 cut(s)	215
FauI	CCCGC	1 cut(s)	452
Fnu4HI	GCNGC	4 cut(s)	358, 361, 364, 396
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	358, 361, 364, 396
GlaI	GCGC	2 cut(s)	328, 367
GluI	GCNGC	4 cut(s)	358, 361, 364, 396
GsaI	CCCAGC	2 cut(s)	20, 452
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	317, 395
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	2 cut(s)	329, 368
Hin1I	GRCGYC	1 cut(s)	236
Hin6I	GCGC	2 cut(s)	327, 366
HinP1I	GCGC	2 cut(s)	327, 366
HinfI	GANTC	2 cut(s)	162, 228
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	451
Hpy188I	TCNGA	4 cut(s)	99, 161, 176, 403
Hpy188III	TCNNGA	3 cut(s)	232, 341, 480
Hpy99I	CGWCG	4 cut(s)	238, 296, 403, 428
HpyCH4IV	ACGT	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 363
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	236
HspAI	GCGC	2 cut(s)	327, 366
Kzo9I	GATC	3 cut(s)	99, 285, 310
LpnPI	CCDG	9 cut(s)	30, 37, 67, 100, 236, 299, 326, 434, 449
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	1 cut(s)	282
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	89, 439
MalI	GATC	3 cut(s)	101, 287, 312
MboI	GATC	3 cut(s)	99, 285, 310
MboII	GAAGA	2 cut(s)	182, 394
MhlI	GDGCHC	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	2 cut(s)	49, 434
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	2 cut(s)	199, 381
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	1 cut(s)	223
MvnI	CGCG	2 cut(s)	368, 398
MwoI	GCNNNNNNNGC	2 cut(s)	209, 363
NdeII	GATC	3 cut(s)	99, 285, 310
NmeAIII	GCCGAG	2 cut(s)	184, 249
NmuCI	GTSAC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	4 cut(s)	359, 362, 365, 397
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	214
PspFI	CCCAGC	2 cut(s)	16, 448
PspPI	GGNCC	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	4 cut(s)	358, 361, 364, 396
Sau3AI	GATC	3 cut(s)	99, 285, 310
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	6 cut(s)	81, 181, 205, 214, 239, 262
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	2 cut(s)	49, 434
SsiI	CCGC	4 cut(s)	360, 363, 396, 459
SstI	GAGCTC	1 cut(s)	214
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	4 cut(s)	284, 291, 309, 321
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	49, 434
TauI	GCSGC	3 cut(s)	363, 366, 398
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	357
Tsp45I	GTSAC	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.