Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

31170486 .. 31172379

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1238600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTTCCTCCTCCCTATCCCTCCTCTCCCCCCACAATGCCTCCACCGCCACCCACCTTATCCTGCGCACCCCCAAATCCCCTAACATGCGCTCTTCCTACCGACCCATGTCCGTCAAAGCGCGCACAGTCCCCGCGCTCACTCAAGATGACCTCAAGAAGCTCGCCGCCGACAAGGCCGTCGAGTACGTCAAATCTGGAATGGTCCTCGGCCTCGGCACCGGCTCCACTGCCGCCTTCGTGGTCTCCAAGCTCGGTGAGCTCCTCAAATCCGGCGAATTGAAGGACATTATTGGAGTCCCGACTTCCAAGCGCACGGAGGACCAAGCTCGCCAGTTGGGTATTCCCCTTTCCGTGCTCGACGATCACCCGAAGATCGATTTGGCGATCGATGGCGCCGATGAGGTCGACCCAAATCTCGATTTGGTCAAAGGGCGCGGCGGAGCTCTGCTGAGGGAGAAGATGGTGGAGGCGGCATCGGAGAAGTTTGTGGTGGTGGCGGACGAAACGAAGCTGGTGACTGGGCTCGGCGGAAGCGGGCTGGCAATGCCGGTGGAGGTGGTGCAGTTCTGCTGGAAATACAACTTGGTGAGGCTTCAGGAGCTGTTTAAGGAAGAAGGGGTGGAGGCGAAATTGAGGGTCGACGGCGACGGGAAGCCGTATGTGACTGATAACTTCAATTACATTGTGGATTTGTACTTCCAGACTCCGATCAAAGACGGGCCGGCGGCAGGGAAGGAGATTTTGAAATTCGAAGGTGTTGTGGAACATGGGTTGTTCTTGGACATGGCGACGGCGGTGATCATTGCCGGCACGAATGGAGTGGATGTGAAGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

281

Amino Acids

30.07

Weight (kDa)

5.89

Isoelectric Point (pI)

23.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	99 - 274	1.7e-60	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc16I	TGCGCA	1 cut(s)	68
AccB1I	GGYRCC	2 cut(s)	218, 395
AccI	GTMKAC	2 cut(s)	408, 642
AccII	CGCG	3 cut(s)	124, 137, 438
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	2 cut(s)	188, 698
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	3 cut(s)	283, 679, 748
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 397, 569, 601
AluBI	AGCT	7 cut(s)	163, 253, 262, 329, 446, 514, 604
AluI	AGCT	7 cut(s)	163, 253, 262, 329, 446, 514, 604
Alw21I	GWGCWC	3 cut(s)	264, 360, 448
Alw26I	GTCTC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	604
AoxI	GGCC	3 cut(s)	177, 211, 722
ApoI	RAATTY	1 cut(s)	749
AspLEI	GCGC	8 cut(s)	69, 93, 124, 126, 139, 315, 398, 438
AspS9I	GGNCC	3 cut(s)	205, 322, 722
AsuHPI	GGTGA	5 cut(s)	269, 359, 529, 601, 811
AsuII	TTCGAA	1 cut(s)	753
AvaII	GGWCC	2 cut(s)	205, 322
BanI	GGYRCC	2 cut(s)	218, 395
BanII	GRGCYC	3 cut(s)	264, 448, 528
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	3 cut(s)	264, 360, 448
BbvCI	CCTCAGC	1 cut(s)	452
BccI	CCATC	2 cut(s)	386, 457
BceAI	ACGGC	4 cut(s)	164, 643, 661, 810
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	399
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	5 cut(s)	168, 234, 439, 474, 729
BlsI	GCNGC	5 cut(s)	169, 235, 440, 475, 730
Bme18I	GGWCC	2 cut(s)	205, 322
BmgT120I	GGNCC	3 cut(s)	205, 322, 722
BmiI	GGNNCC	3 cut(s)	220, 226, 397
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	531
BoxI	GACNNNNGTC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	753
BpuEI	CTTGAG	2 cut(s)	129, 140
Bsa29I	ATCGAT	2 cut(s)	378, 390
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	208, 214
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 813, 843
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse118I	RCCGGY	4 cut(s)	221, 550, 724, 809
Bse1I	ACTGG	2 cut(s)	334, 526
Bse3DI	GCAATG	2 cut(s)	552, 804
BseCI	ATCGAT	2 cut(s)	378, 390
BseDI	CCNNGG	2 cut(s)	208, 214
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMI	GCAATG	2 cut(s)	552, 804
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	334, 526
BsePI	GCGCGC	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	14, 254
BsgI	GTGCAG	1 cut(s)	584
Bsh1236I	CGCG	3 cut(s)	124, 137, 438
Bsh1285I	CGRYCG	1 cut(s)	390
BshFI	GGCC	3 cut(s)	179, 213, 724
BshNI	GGYRCC	2 cut(s)	218, 395
BshVI	ATCGAT	2 cut(s)	378, 390
BsiEI	CGRYCG	1 cut(s)	390
BsiHKAI	GWGCWC	3 cut(s)	264, 360, 448
BsiSI	CCGG	5 cut(s)	222, 273, 551, 725, 810
BslFI	GGGAC	2 cut(s)	116, 284
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	116, 284
BsnI	GGCC	3 cut(s)	179, 213, 724
Bso31I	GGTCTC	1 cut(s)	250
Bsp119I	TTCGAA	1 cut(s)	753
Bsp1286I	GDGCHC	4 cut(s)	264, 360, 448, 528
Bsp143I	GATC	5 cut(s)	364, 375, 387, 711, 801
BspANI	GGCC	3 cut(s)	179, 213, 724
BspCNI	CTCAG	1 cut(s)	444
BspDI	ATCGAT	2 cut(s)	378, 390
BspFNI	CGCG	3 cut(s)	124, 137, 438
BspLI	GGNNCC	3 cut(s)	220, 226, 397
BspQI	GCTCTTC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	753
BspT107I	GGYRCC	2 cut(s)	218, 395
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	552, 804
BsrFI	RCCGGY	4 cut(s)	221, 550, 724, 809
BsrI	ACTGG	2 cut(s)	334, 526
BssAI	RCCGGY	4 cut(s)	221, 550, 724, 809
BssECI	CCNNGG	2 cut(s)	208, 214
BssHII	GCGCGC	1 cut(s)	122
BssMI	GATC	5 cut(s)	364, 375, 387, 711, 801
BssNI	GRCGYC	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	396
BstBI	TTCGAA	1 cut(s)	753
BstC8I	GCNNGC	7 cut(s)	124, 165, 331, 539, 543, 726, 811
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	832
BstFNI	CGCG	3 cut(s)	124, 137, 438
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	8 cut(s)	69, 93, 124, 126, 139, 315, 398, 438
BstKTI	GATC	5 cut(s)	367, 378, 390, 714, 804
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	5 cut(s)	364, 375, 387, 711, 801
BstMCI	CGRYCG	1 cut(s)	390
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 176, 259, 547, 601
BstNSI	RCATGY	1 cut(s)	91
BstPAI	GACNNNNGTC	1 cut(s)	109
BstUI	CGCG	3 cut(s)	124, 137, 438
BstV2I	GAAGAC	1 cut(s)	839
Bsu15I	ATCGAT	2 cut(s)	378, 390
BsuRI	GGCC	3 cut(s)	179, 213, 724
BsuTUI	ATCGAT	2 cut(s)	378, 390
BtsCI	GGATG	1 cut(s)	832
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	7 cut(s)	124, 165, 331, 539, 543, 726, 811
CaiI	CAGNNNCTG	1 cut(s)	604
CfoI	GCGC	8 cut(s)	69, 93, 124, 126, 139, 315, 398, 438
Cfr10I	RCCGGY	4 cut(s)	221, 550, 724, 809
Cfr13I	GGNCC	3 cut(s)	205, 322, 722
ClaI	ATCGAT	2 cut(s)	378, 390
Csp6I	GTAC	2 cut(s)	187, 697
CspCI	CAANNNNNGTGG	2 cut(s)	534, 569
CviAII	CATG	4 cut(s)	88, 109, 770, 787
CviQI	GTAC	2 cut(s)	187, 697
DdeI	CTNAG	1 cut(s)	452
DinI	GGCGCC	1 cut(s)	397
DpnI	GATC	5 cut(s)	366, 377, 389, 713, 803
DpnII	GATC	5 cut(s)	364, 375, 387, 711, 801
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
EciI	GGCGGA	3 cut(s)	456, 515, 546
Ecl136II	GAGCTC	2 cut(s)	262, 446
Eco24I	GRGCYC	3 cut(s)	264, 448, 528
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	205, 322
Eco53kI	GAGCTC	2 cut(s)	262, 446
Eco57I	CTGAAG	1 cut(s)	581
EcoICRI	GAGCTC	2 cut(s)	262, 446
EcoT38I	GRGCYC	3 cut(s)	264, 448, 528
EgeI	GGCGCC	1 cut(s)	397
EheI	GGCGCC	1 cut(s)	397
FaeI	CATG	4 cut(s)	91, 112, 773, 790
FaiI	YATR	5 cut(s)	89, 110, 663, 771, 788
FaqI	GGGAC	2 cut(s)	116, 284
FatI	CATG	4 cut(s)	87, 108, 769, 786
FauI	CCCGC	2 cut(s)	142, 530
FbaI	TGATCA	1 cut(s)	801
FblI	GTMKAC	2 cut(s)	408, 642
Fnu4HI	GCNGC	5 cut(s)	168, 234, 439, 474, 729
FokI	GGATG	1 cut(s)	839
FriOI	GRGCYC	3 cut(s)	264, 448, 528
Fsp4HI	GCNGC	5 cut(s)	168, 234, 439, 474, 729
FspI	TGCGCA	1 cut(s)	68
GlaI	GCGC	8 cut(s)	68, 92, 123, 125, 138, 314, 397, 437
GluI	GCNGC	5 cut(s)	168, 234, 439, 474, 729
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	3 cut(s)	179, 213, 724
HapII	CCGG	5 cut(s)	222, 273, 551, 725, 810
HhaI	GCGC	8 cut(s)	69, 93, 124, 126, 139, 315, 398, 438
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	4 cut(s)	91, 112, 773, 790
Hin6I	GCGC	8 cut(s)	67, 91, 122, 124, 137, 313, 396, 436
HinP1I	GCGC	8 cut(s)	67, 91, 122, 124, 137, 313, 396, 436
HincII	GTYRAC	2 cut(s)	409, 643
HindII	GTYRAC	2 cut(s)	409, 643
HinfI	GANTC	2 cut(s)	297, 706
HpaII	CCGG	5 cut(s)	222, 273, 551, 725, 810
HphI	GGTGA	5 cut(s)	269, 359, 529, 601, 811
Hpy166II	GTNNAC	2 cut(s)	409, 643
Hpy188I	TCNGA	2 cut(s)	481, 711
Hpy188III	TCNNGA	7 cut(s)	146, 157, 198, 301, 419, 599, 703
Hpy8I	GTNNAC	2 cut(s)	409, 643
Hpy99I	CGWCG	5 cut(s)	185, 365, 647, 653, 796
HpyAV	CCTTC	5 cut(s)	247, 277, 611, 730, 749
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 176, 259, 547, 601
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	4 cut(s)	91, 112, 773, 790
HspAI	GCGC	8 cut(s)	67, 91, 122, 124, 137, 313, 396, 436
KasI	GGCGCC	1 cut(s)	395
KroI	GCCGGC	2 cut(s)	724, 809
KroNI	GCCGGC	2 cut(s)	726, 811
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	5 cut(s)	364, 375, 387, 711, 801
LguI	GCTCTTC	1 cut(s)	100
LmnI	GCTCC	4 cut(s)	230, 267, 443, 601
LweI	GCATC	1 cut(s)	485
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	517, 664
MalI	GATC	5 cut(s)	366, 377, 389, 713, 803
MboI	GATC	5 cut(s)	364, 375, 387, 711, 801
MboII	GAAGA	4 cut(s)	87, 385, 472, 626
MhlI	GDGCHC	4 cut(s)	264, 360, 448, 528
MluCI	AATT	4 cut(s)	278, 632, 679, 749
Mly113I	GGCGCC	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	306, 700
MroNI	GCCGGC	2 cut(s)	724, 809
MseI	TTAA	1 cut(s)	609
MspI	CCGG	5 cut(s)	222, 273, 551, 725, 810
MvnI	CGCG	3 cut(s)	124, 137, 438
MwoI	GCNNNNNNNGC	5 cut(s)	47, 176, 259, 547, 601
NaeI	GCCGGC	2 cut(s)	726, 811
NarI	GGCGCC	1 cut(s)	396
NdeII	GATC	5 cut(s)	364, 375, 387, 711, 801
NgoMIV	GCCGGC	2 cut(s)	724, 809
NlaIII	CATG	4 cut(s)	91, 112, 773, 790
NlaIV	GGNNCC	3 cut(s)	220, 226, 397
NmeAIII	GCCGAG	3 cut(s)	189, 195, 507
NmuCI	GTSAC	2 cut(s)	517, 664
NsbI	TGCGCA	1 cut(s)	68
NspI	RCATGY	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	753
PauI	GCGCGC	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PdiI	GCCGGC	2 cut(s)	726, 811
PkrI	GCNGC	5 cut(s)	169, 235, 440, 475, 730
Ple19I	CGATCG	1 cut(s)	390
PleI	GAGTC	2 cut(s)	305, 700
PluTI	GGCGCC	1 cut(s)	399
PpsI	GAGTC	2 cut(s)	305, 700
PshAI	GACNNNNGTC	1 cut(s)	109
Psp124BI	GAGCTC	2 cut(s)	264, 448
PspN4I	GGNNCC	3 cut(s)	220, 226, 397
PspPI	GGNCC	3 cut(s)	205, 322, 722
PstNI	CAGNNNCTG	1 cut(s)	604
PteI	GCGCGC	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	390
RsaI	GTAC	2 cut(s)	188, 698
RsaNI	GTAC	2 cut(s)	187, 697
SacI	GAGCTC	2 cut(s)	264, 448
SalI	GTCGAC	2 cut(s)	407, 641
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	5 cut(s)	168, 234, 439, 474, 729
Sau3AI	GATC	5 cut(s)	364, 375, 387, 711, 801
Sau96I	GGNCC	3 cut(s)	205, 322, 722
SchI	GAGTC	2 cut(s)	306, 700
SduI	GDGCHC	4 cut(s)	264, 360, 448, 528
SfaNI	GCATC	1 cut(s)	485
SfoI	GGCGCC	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	753
SinI	GGWCC	2 cut(s)	205, 322
SmlI	CTYRAG	2 cut(s)	144, 155
SmoI	CTYRAG	2 cut(s)	144, 155
Sse9I	AATT	4 cut(s)	278, 632, 679, 749
SspDI	GGCGCC	1 cut(s)	395
SstI	GAGCTC	2 cut(s)	264, 448
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	8 cut(s)	183, 360, 378, 390, 408, 420, 642, 753
TasI	AATT	4 cut(s)	278, 632, 679, 749
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	5 cut(s)	170, 236, 441, 476, 731
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	517, 664
Tsp45I	GTSAC	2 cut(s)	517, 664
TspGWI	ACGGA	3 cut(s)	103, 332, 343
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	205, 322
XapI	RAATTY	1 cut(s)	749
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	2 cut(s)	408, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.