Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

58961042 .. 58961387

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTAGAGGCCGCGTCGGAGAAGTTCGTGGTGGTCGCCGATGAGACGAAACTCGGTGACGGGGCCGGAAGGAAGCGGGCTGGTAATAGGTTGTTCTTGAATATGGAGACCGTGGTGATCATTGCAGGGAATGATGGAGTGGATGTGCGTACCAAAATGGTGAAATGGATAATTGATAGAGGTTTGGAGGTCGGAGAGAGTGGAATTGGAGATGGGAGGTGGGTGGGGATGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.55

Weight (kDa)

4.94

Isoelectric Point (pI)

19.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	12, 76
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	100
Alw26I	GTCTC	2 cut(s)	38, 101
AoxI	GGCC	2 cut(s)	9, 63
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	68, 127, 172
BccI	CCATC	3 cut(s)	128, 206, 223
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	38, 101
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bse3DI	GCAATG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	148, 234
BseMI	GCAATG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	11, 65
BsiSI	CCGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	38, 101
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	11, 65
Bso31I	GGTCTC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	12, 76
BspANI	GGCC	2 cut(s)	11, 65
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	148, 234
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	2 cut(s)	38, 101
BstMBI	GATC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	11, 65
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	148, 234
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	150
CviJI	RGCY	3 cut(s)	11, 65, 80
CviKI_1	RGCY	3 cut(s)	11, 65, 80
CviQI	GTAC	1 cut(s)	150
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	38
FaiI	YATR	1 cut(s)	104
FauI	CCCGC	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	11, 65
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	3
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	3 cut(s)	68, 127, 172
Hpy188I	TCNGA	2 cut(s)	19, 194
Hpy188III	TCNNGA	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	3 cut(s)	66, 79, 111
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MluCI	AATT	2 cut(s)	171, 204
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	173, 181, 210, 226
MspI	CCGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	14
NdeII	GATC	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	63
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	63
SetI	ASST	4 cut(s)	92, 184, 192, 221
Sse9I	AATT	2 cut(s)	171, 204
SsiI	CCGC	2 cut(s)	12, 76
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	2 cut(s)	171, 204
TauI	GCSGC	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.