Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Forward (+)

42063478 .. 42063830

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGTGGAGGCCGCATCGAAGAAGTTTGTGGTGGTCGCCAACGAGACGAAAGCTGGTGACTGGGTTGGAAGGAAGAGAGGCGGCAATGGGTTGTTCTTGAATATGGCAACCGCTGTGATCATTGTAGGGAAGGATGAAGTGGATGTGCGGACCAAAATGGTGAAATGGATAATTGATAGAGGTTTAGAGGTCGGAGAGAGTGGAATCGGAGATGGAGGAATAGGGTCCTCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.21

Weight (kDa)

6.22

Isoelectric Point (pI)

9.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	12, 81, 111, 148
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	150, 225
AsuHPI	GGTGA	2 cut(s)	68, 172
AvaII	GGWCC	2 cut(s)	150, 225
BccI	CCATC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	235
BisI	GCNGC	2 cut(s)	12, 82
BlsI	GCNGC	2 cut(s)	13, 83
Bme18I	GGWCC	2 cut(s)	150, 225
BmgT120I	GGNCC	2 cut(s)	150, 225
BmiI	GGNNCC	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	139, 148
BseMI	GCAATG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	4 cut(s)	12, 81, 111, 148
BspANI	GGCC	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	139, 148
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	139, 148
Cfr13I	GGNCC	2 cut(s)	150, 225
CviJI	RGCY	2 cut(s)	11, 53
CviKI_1	RGCY	2 cut(s)	11, 53
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	150, 225
EcoO109I	RGGNCCY	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	38
FaiI	YATR	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	12, 82
FokI	GGATG	2 cut(s)	146, 155
Fsp4HI	GCNGC	2 cut(s)	12, 82
FspBI	CTAG	1 cut(s)	235
GluI	GCNGC	2 cut(s)	12, 82
HaeIII	GGCC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	204
HphI	GGTGA	2 cut(s)	68, 172
Hpy188I	TCNGA	3 cut(s)	194, 209, 232
Hpy188III	TCNNGA	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	63, 124
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	2 cut(s)	39, 46
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	31, 85
MluCI	AATT	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	46, 172
MnlI	CCTC	4 cut(s)	71, 173, 181, 209
MspA1I	CMGCKG	1 cut(s)	113
NdeII	GATC	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	13, 83
PpuMI	RGGWCCY	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	150, 225
PspPPI	RGGWCCY	1 cut(s)	225
SatI	GCNGC	2 cut(s)	12, 82
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	150, 225
SetI	ASST	3 cut(s)	55, 184, 192
SfaNI	GCATC	1 cut(s)	23
SgeI	CNNG	4 cut(s)	55, 66, 73, 109
SinI	GGWCC	2 cut(s)	150, 225
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	4 cut(s)	12, 81, 111, 148
SspMI	CTAG	1 cut(s)	235
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	171
TauI	GCSGC	2 cut(s)	14, 84
TfiI	GAWTC	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	150, 225
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.