Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

1768779 .. 1769806

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACTGTCAAGAAAGTTGAGATCAAGGTGGATATAAACTGTGGAAAATGCAACAGCGCAATCATGGAAGCAGTCACAGAGATAGAAGGTGTGAATCATATTTCATTAGATGAAGGAAATAGTATACTTACCGTGGTGGGGACAATGGATCCGGTCTGCGTAGCAACAAGGCTGAAAAAGATTAAACAGAAACCTGTGATCATTAGCGTTGGACCACCACCAAAACCTCCTGAGCCACCAAAGCCTCCAGAGCCTGAAAAACCAAAGCCTCCACCAGCACCTGAACCACCAAAGCATGTATGCAAGCCACCTTACTGCAACAGTTGTGATGTTGTGTCTGTTACTACCTATGAAAGTGGAAGCGGCTGCACCATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

126

Amino Acids

13.43

Weight (kDa)

7.54

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	9 - 61	4.8e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	2 cut(s)	143, 156
AfiI	CCNNNNNNNGG	1 cut(s)	138
AlwI	GGATC	2 cut(s)	143, 156
AlwNI	CAGNNNCTG	2 cut(s)	254, 281
ApeKI	GCWGC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	198
BisI	GCNGC	2 cut(s)	364, 367
BlsI	GCNGC	2 cut(s)	365, 368
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	21, 148, 198
BspACI	CCGC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	143, 156
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	3 cut(s)	21, 148, 198
BssNAI	GTATAC	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	125
Bst4CI	ACNGT	4 cut(s)	7, 41, 133, 323
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	24, 151, 201
BstMBI	GATC	3 cut(s)	21, 148, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 250
BstNSI	RCATGY	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BstZ17I	GTATAC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	305
CaiI	CAGNNNCTG	2 cut(s)	254, 281
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	212
CviAII	CATG	2 cut(s)	64, 296
CviJI	RGCY	7 cut(s)	172, 235, 244, 253, 268, 307, 366
CviKI_1	RGCY	7 cut(s)	172, 235, 244, 253, 268, 307, 366
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	3 cut(s)	23, 150, 200
DpnII	GATC	3 cut(s)	21, 148, 198
Eco47I	GGWCC	1 cut(s)	212
FaeI	CATG	2 cut(s)	67, 299
FaiI	YATR	7 cut(s)	35, 65, 99, 125, 297, 301, 351
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	63, 295
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	364, 367
Fsp4HI	GCNGC	2 cut(s)	364, 367
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	364, 367
GsuI	CTGGAG	1 cut(s)	231
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	67, 299
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188III	TCNNGA	3 cut(s)	10, 230, 248
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	80, 107
HpyCH4III	ACNGT	4 cut(s)	7, 41, 133, 323
HpyCH4V	TGCA	4 cut(s)	51, 303, 318, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 250
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	67, 299
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	21, 148, 198
LpnPI	CCDG	7 cut(s)	165, 207, 243, 261, 267, 288, 294
Lsp1109I	GCAGC	1 cut(s)	353
MaeIII	GTNAC	2 cut(s)	73, 340
MalI	GATC	3 cut(s)	23, 150, 200
MboI	GATC	3 cut(s)	21, 148, 198
MflI	RGATCY	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	237, 255, 279
MseI	TTAA	1 cut(s)	183
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	241, 250
NdeII	GATC	3 cut(s)	21, 148, 198
NlaIII	CATG	2 cut(s)	67, 299
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	365, 368
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	212
PstNI	CAGNNNCTG	2 cut(s)	254, 281
PsuI	RGATCY	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	364, 367
Sau3AI	GATC	3 cut(s)	21, 148, 198
Sau96I	GGNCC	1 cut(s)	212
SetI	ASST	7 cut(s)	30, 91, 196, 229, 283, 313, 350
SinI	GGWCC	1 cut(s)	212
SsiI	CCGC	1 cut(s)	363
TaaI	ACNGT	4 cut(s)	7, 41, 133, 323
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	366
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	93, 126, 366
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.