Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Forward (+)

9310797 .. 9311572

Gene Structure 776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACGACTAAGAAAATCGAGATCAAAGTGGATATCGATTGTGAGAAATGCAAACATGCAATCATGGAAGCTGTCACAGAGCTAGAAGGTGTGAATATAGTTTCACTGGATCAAGAGAAGAGTATACTAACCGTGGTGGGTACTATGGATCCGGTCTGCGTAGCAGAACAGCTTAAGAAGATCAATAAGAAACCAGTAGTAATCAGCGTCGGACCACCGAAAAAACCAGACCCAAAACCAGACCCTAAGAAGGACCCTTGTTTCATTCCTTACTGCTACTACACCCCCCGTGACATGGTATCAGTTAATACCTATGAAAGCGGAAGTGGCTGCACCATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

6.56

Isoelectric Point (pI)

21.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	9 - 63	2.1e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	3 cut(s)	117, 143, 156
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	250, 295
AflII	CTTAAG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	71, 82, 172
AluI	AGCT	3 cut(s)	71, 82, 172
AlwI	GGATC	3 cut(s)	117, 143, 156
ApeKI	GCWGC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	212, 253
AvaII	GGWCC	2 cut(s)	212, 253
BamHI	GGATCC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme18I	GGWCC	2 cut(s)	212, 253
BmgT120I	GGNCC	2 cut(s)	212, 253
BmiI	GGNNCC	2 cut(s)	150, 255
Bsa29I	ATCGAT	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 295
Bse1I	ACTGG	2 cut(s)	111, 194
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	250, 295
BseNI	ACTGG	2 cut(s)	111, 194
BseXI	GCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	250, 295
Bsp143I	GATC	4 cut(s)	21, 109, 148, 180
BspACI	CCGC	1 cut(s)	321
BspDI	ATCGAT	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	150, 255
BspPI	GGATC	3 cut(s)	117, 143, 156
BspTI	CTTAAG	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	111, 194
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	4 cut(s)	21, 109, 148, 180
BssNAI	GTATAC	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	173
BstDEI	CTNAG	2 cut(s)	9, 246
BstDSI	CCRYGG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	24, 112, 151, 183
BstMBI	GATC	4 cut(s)	21, 109, 148, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BstZ17I	GTATAC	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	212, 253
ClaI	ATCGAT	1 cut(s)	36
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	3 cut(s)	56, 64, 295
CviJI	RGCY	4 cut(s)	71, 82, 172, 330
CviKI_1	RGCY	4 cut(s)	71, 82, 172, 330
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	2 cut(s)	9, 246
DpnI	GATC	4 cut(s)	23, 111, 150, 182
DpnII	GATC	4 cut(s)	21, 109, 148, 180
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	212, 253
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	34
FaeI	CATG	3 cut(s)	59, 67, 298
FaiI	YATR	7 cut(s)	57, 65, 98, 125, 146, 296, 315
FatI	CATG	3 cut(s)	55, 63, 294
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	1 cut(s)	331
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	196
Hin1II	CATG	3 cut(s)	59, 67, 298
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	2 cut(s)	19, 113
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	80, 244
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	51, 59, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
HpyF3I	CTNAG	2 cut(s)	9, 246
Hsp92II	CATG	3 cut(s)	59, 67, 298
Kzo9I	GATC	4 cut(s)	21, 109, 148, 180
LpnPI	CCDG	5 cut(s)	92, 165, 207, 240, 252
Lsp1109I	GCAGC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	73, 290
MalI	GATC	4 cut(s)	23, 111, 150, 182
MboI	GATC	4 cut(s)	21, 109, 148, 180
MboII	GAAGA	2 cut(s)	130, 190
MflI	RGATCY	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	190
MseI	TTAA	2 cut(s)	174, 306
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	327
NdeII	GATC	4 cut(s)	21, 109, 148, 180
NlaIII	CATG	3 cut(s)	59, 67, 298
NlaIV	GGNNCC	2 cut(s)	150, 255
NmuCI	GTSAC	2 cut(s)	73, 290
NspI	RCATGY	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	150, 255
PspPI	GGNCC	2 cut(s)	212, 253
PspPPI	RGGWCCY	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	174, 306
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	4 cut(s)	21, 109, 148, 180
Sau96I	GGNCC	2 cut(s)	212, 253
SetI	ASST	5 cut(s)	73, 84, 91, 174, 314
SinI	GGWCC	2 cut(s)	212, 253
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	18, 36
Tru1I	TTAA	2 cut(s)	174, 306
Tru9I	TTAA	2 cut(s)	174, 306
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	73, 290
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	2 cut(s)	73, 290
TspDTI	ATGAA	2 cut(s)	253, 330
TspRI	CASTG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	212, 253
XceI	RCATGY	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.