Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000469.1

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Forward (+)

182835 .. 184824

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000469.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgaagaaaattgtaataaaagtcagcataaattgccagatctgcaagacagatgtgttgaaagccgttaccaagcttcaaggaatagatattgtagccgtagatggtcagaagggaacattgacggtcgtaggagatgttgatccagtgatggtggtgagacgactaaggaaggttgggaaagtagcagaaattgtgagtgttggacccccaaaggcttctgaacctaagcctcttatagtccttgatctccctttatgctgtaatcaatgtcagcttgttggattcaaatatgttccttatgagggtggaggactgtgctgtggcggcgtggcttggaccttgacaagcttgcaagcctgtggtgggtctgcgacttttgatcgttgggaggttctagcggtggcagactggtggtttcgacgtttctcttcctttgatcgacggcggcaactggcaggacggcgtgaggtggggattcgacgggctcgttttggatcagagttttccgatctggtatgggtgcttcggaaccatgcggggaggaggtgttttgggagaggtggggtgtcttgtcggcgtgctggcggggtggatggtcttccgacgtctactcgtggcggtggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

209

Amino Acids

22.71

Weight (kDa)

9.88

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	611
AciI	CCGC	6 cut(s)	327, 401, 448, 539, 588, 621
AclWI	GGATC	2 cut(s)	137, 505
AcyI	GRCGYC	1 cut(s)	608
AfiI	CCNNNNNNNGG	2 cut(s)	305, 366
AgsI	TTSAA	3 cut(s)	61, 80, 289
AluBI	AGCT	3 cut(s)	76, 277, 351
AluI	AGCT	3 cut(s)	76, 277, 351
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	137, 505
AspS9I	GGNCC	2 cut(s)	206, 339
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	206, 339
BanII	GRGCYC	1 cut(s)	490
BarI	GAAGNNNNNNTAC	2 cut(s)	510, 542
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	593
BccI	CCATC	3 cut(s)	98, 145, 590
BceAI	ACGGC	4 cut(s)	50, 83, 461, 479
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	398, 628
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	2 cut(s)	328, 449
BlsI	GCNGC	2 cut(s)	329, 450
Bme18I	GGWCC	2 cut(s)	206, 339
BmgT120I	GGNCC	2 cut(s)	206, 339
BmiI	GGNNCC	2 cut(s)	208, 533
BpiI	GAAGAC	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 366
Bse1I	ACTGG	3 cut(s)	146, 416, 459
Bse8I	GATNNNNATC	1 cut(s)	141
BseGI	GGATG	1 cut(s)	601
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	305, 366
BseNI	ACTGG	3 cut(s)	146, 416, 459
BseRI	GAGGAG	1 cut(s)	559
Bsh1285I	CGRYCG	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	305, 366
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	7 cut(s)	39, 142, 247, 382, 439, 497, 511
BspACI	CCGC	6 cut(s)	327, 401, 448, 539, 588, 621
BspLI	GGNNCC	2 cut(s)	208, 533
BspPI	GGATC	2 cut(s)	137, 505
BsrI	ACTGG	3 cut(s)	146, 416, 459
BssMI	GATC	7 cut(s)	39, 142, 247, 382, 439, 497, 511
BssNI	GRCGYC	1 cut(s)	608
BssSI	CACGAG	1 cut(s)	615
Bst2BI	CACGAG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	127, 318
Bst6I	CTCTTC	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstC8I	GCNNGC	4 cut(s)	353, 357, 582, 586
BstDEI	CTNAG	2 cut(s)	167, 228
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	7 cut(s)	42, 145, 250, 385, 442, 500, 514
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	7 cut(s)	39, 142, 247, 382, 439, 497, 511
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 42, 327
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	4 cut(s)	353, 357, 582, 586
Cfr13I	GGNCC	2 cut(s)	206, 339
CviAII	CATG	1 cut(s)	536
DdeI	CTNAG	2 cut(s)	167, 228
DpnI	GATC	7 cut(s)	41, 144, 249, 384, 441, 499, 513
DpnII	GATC	7 cut(s)	39, 142, 247, 382, 439, 497, 511
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	206, 339
EcoT38I	GRGCYC	1 cut(s)	490
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	539
FaiI	YATR	7 cut(s)	29, 239, 259, 294, 303, 520, 537
FatI	CATG	1 cut(s)	535
FauI	CCCGC	2 cut(s)	532, 581
FblI	GTMKAC	1 cut(s)	611
Fnu4HI	GCNGC	2 cut(s)	328, 449
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	2 cut(s)	328, 449
FspBI	CTAG	2 cut(s)	398, 628
GluI	GCNGC	2 cut(s)	328, 449
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	1 cut(s)	539
HindIII	AAGCTT	2 cut(s)	74, 349
HinfI	GANTC	2 cut(s)	285, 478
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	612
Hpy188I	TCNGA	6 cut(s)	111, 223, 502, 511, 531, 606
Hpy8I	GTNNAC	1 cut(s)	612
Hpy99I	CGWCG	4 cut(s)	426, 447, 486, 610
HpyAV	CCTTC	2 cut(s)	106, 166
HpyCH4III	ACNGT	2 cut(s)	127, 318
HpyCH4IV	ACGT	2 cut(s)	424, 608
HpyCH4V	TGCA	2 cut(s)	45, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 42, 327
HpyF3I	CTNAG	2 cut(s)	167, 228
HpySE526I	ACGT	2 cut(s)	424, 608
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	1 cut(s)	539
Kzo9I	GATC	7 cut(s)	39, 142, 247, 382, 439, 497, 511
LpnPI	CCDG	8 cut(s)	50, 159, 373, 397, 440, 444, 500, 570
MaeI	CTAG	2 cut(s)	398, 628
MaeII	ACGT	2 cut(s)	424, 608
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	7 cut(s)	41, 144, 249, 384, 441, 499, 513
MboI	GATC	7 cut(s)	39, 142, 247, 382, 439, 497, 511
MboII	GAAGA	3 cut(s)	16, 423, 593
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	3 cut(s)	9, 31, 192
MmeI	TCCRAC	3 cut(s)	184, 262, 629
MnlI	CCTC	8 cut(s)	243, 298, 305, 385, 463, 537, 540, 554
MwoI	GCNNNNNNNGC	3 cut(s)	33, 42, 327
NdeII	GATC	7 cut(s)	39, 142, 247, 382, 439, 497, 511
NlaIII	CATG	1 cut(s)	539
NlaIV	GGNNCC	2 cut(s)	208, 533
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	285, 478
PkrI	GCNGC	2 cut(s)	329, 450
PspN4I	GGNNCC	2 cut(s)	208, 533
PspPI	GGNCC	2 cut(s)	206, 339
PsuI	RGATCY	1 cut(s)	39
SatI	GCNGC	2 cut(s)	328, 449
Sau3AI	GATC	7 cut(s)	39, 142, 247, 382, 439, 497, 511
Sau96I	GGNCC	2 cut(s)	206, 339
SduI	GDGCHC	1 cut(s)	490
SinI	GGWCC	2 cut(s)	206, 339
Sse9I	AATT	3 cut(s)	9, 31, 192
SsiI	CCGC	6 cut(s)	327, 401, 448, 539, 588, 621
SspMI	CTAG	2 cut(s)	398, 628
TaaI	ACNGT	2 cut(s)	127, 318
TaiI	ACGT	2 cut(s)	427, 611
TaqI	TCGA	3 cut(s)	421, 442, 481
TasI	AATT	3 cut(s)	9, 31, 192
TauI	GCSGC	2 cut(s)	330, 451
TfiI	GAWTC	2 cut(s)	285, 478
TscAI	CASTG	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	206, 339
XmiI	GTMKAC	1 cut(s)	611
XspI	CTAG	2 cut(s)	398, 628
ZraI	GACGTC	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.