Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

14562329 .. 14564814

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGTTTCCAGGCATGTTTATGAAGAAGCCCGACAAGAAGGAGGCTCTGAAGCAGCTCAAGGTCCACGTCGGCTTGTTCGGGGCTTGGGTCGTCGCGATCAGAGTCACTCCTTACCTTCTTCACGCTCTTTGTGGCGAGAAGGAGGAGCTCAAGCTCGCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

54

Amino Acids

6.12

Weight (kDa)

9.52

Isoelectric Point (pI)

3.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	95, 158
AcuI	CTGAAG	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	3 cut(s)	55, 148, 154
AluI	AGCT	3 cut(s)	55, 148, 154
Alw21I	GWGCWC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	9
BpuEI	CTTGAG	2 cut(s)	41, 134
BseBI	CCWGG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	64
Bsh1236I	CGCG	2 cut(s)	95, 158
BsiHKAI	GWGCWC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	96
Bsp68I	TCGCGA	2 cut(s)	95, 158
BspFNI	CGCG	2 cut(s)	95, 158
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	156
BstFNI	CGCG	2 cut(s)	95, 158
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	7
BstUI	CGCG	2 cut(s)	95, 158
BstV1I	GCAGC	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	67
BtuMI	TCGCGA	2 cut(s)	95, 158
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	61
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	7 cut(s)	28, 44, 55, 72, 83, 148, 154
CviKI_1	RGCY	7 cut(s)	28, 44, 55, 72, 83, 148, 154
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	14, 20
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	48, 101
Hpy188III	TCNNGA	2 cut(s)	94, 157
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	71, 95
HpyAV	CCTTC	3 cut(s)	31, 125, 133
HpyCH4IV	ACGT	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	1 cut(s)	21
Lsp1109I	GCAGC	1 cut(s)	64
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	2 cut(s)	34, 110
MhlI	GDGCHC	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	34, 136
MslI	CAYNNNNRTG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MvnI	CGCG	2 cut(s)	95, 158
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	103
NruI	TCGCGA	2 cut(s)	95, 158
NspI	RCATGY	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	61
RruI	TCGCGA	2 cut(s)	95, 158
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	150
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	6 cut(s)	57, 63, 69, 117, 150, 156
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	56, 149
SmoI	CTYRAG	2 cut(s)	56, 149
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	7
TaiI	ACGT	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	61
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.