RchiOBHm_Chr6g0277181

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
39614406 .. 39618982
4577 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24866

Sequence Viewer

Length: 1143 bp
ATGTCTAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTGGCCTGGGAAGCCGGGAAGCCGCTGGTCATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTTTAATGCTCTATGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAAACCTCTGTTCCCTCGGATTTTAGGTCATGAAGCTTCAGGAATTGTGGAAAGCGTAGGCGAGGGTGTAACTGAACTCAAACCGGGAGACCATGTCCTCCCGGTGTTCACTGGAGAATGCAAGGAGTGCACACATTGTAAGTCAGAGGAAAGCAACTTGTGTGAACTCCTAAGGATTAATACTGACAGGGGTACTATGCTCAATGACGGCAAGACCCGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTCAATACACTGTTTCACATGTTGGTTCCGTTGTGAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAGTTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCGAAAAAGGGTTCGTCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCCGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATCTGAACTCCAACCGATTTGAGGCAGCCAAGAAGTTTGGGGTGAGTGAATTCGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATAGCTGAGATGACCAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGGAGCATCGACGCTATGATCTCTGCGTTTGAATGTGTTCATGATGGTTGGGGAGTTGCTGTACTTGTTGGAGTGCCAAAGATAGACTATGAATTCAAAACCCATCCGATGAACTTCTTGAATGAGAGGACTCTGAAAGGTGCTTTCTATGGTAAGTACAAGCCCCGCACCGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGATGGAAGTGGACAAATTTATCACTCACTCTGTTCCTCTCTCTGAGATCAACAAGGCATTTGAGTACATGCGTCTAGGAGAGGGAATCCGGTGCCTCATCTGCATGGACCAGTAG

Protein Analysis

380

Amino Acids

41.32

Weight (kDa)

7.13

Isoelectric Point (pI)

27.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 164 8.1e-20 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 206 - 337 2e-25 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 3 cut(s) 91, 437, 1119
AccI GTMKAC 1 cut(s) 156
AccII CGCG 1 cut(s) 635
AciI CCGC 6 cut(s) 41, 65, 534, 633, 635, 985
AclWI GGATC 2 cut(s) 118, 674
AcsI RAATTY 3 cut(s) 728, 911, 1043
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 8 cut(s) 114, 373, 439, 544, 882, 977, 1016, 1094
AfiI CCNNNNNNNGG 2 cut(s) 584, 700
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 5 cut(s) 121, 663, 851, 916, 940
AjnI CCWGG 2 cut(s) 47, 997
AluBI AGCT 3 cut(s) 38, 215, 776
AluI AGCT 3 cut(s) 38, 215, 776
Alw21I GWGCWC 2 cut(s) 311, 818
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 2 cut(s) 307, 814
AlwI GGATC 2 cut(s) 118, 674
AoxI GGCC 1 cut(s) 45
ApaLI GTGCAC 2 cut(s) 307, 814
ApeKI GCWGC 4 cut(s) 38, 500, 629, 704
ApoI RAATTY 3 cut(s) 728, 911, 1043
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 855
Asp718I GGTACC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 1135
AsuC2I CCSGG 4 cut(s) 58, 264, 281, 397
AsuHPI GGTGA 3 cut(s) 34, 733, 781
AvaII GGWCC 1 cut(s) 1135
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 2 cut(s) 311, 818
BanI GGYRCC 3 cut(s) 91, 437, 1119
Bbv12I GWGCWC 2 cut(s) 311, 818
BbvI GCAGC 4 cut(s) 25, 512, 616, 716
BccI CCATC 4 cut(s) 404, 857, 930, 1024
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 2 cut(s) 49, 999
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 4 cut(s) 58, 264, 281, 397
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 1103
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 506
BisI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 705
BlsI GCNGC 6 cut(s) 40, 66, 502, 631, 634, 706
Bme1390I CCNGG 6 cut(s) 49, 58, 264, 281, 397, 999
Bme18I GGWCC 1 cut(s) 1135
BmgT120I GGNCC 1 cut(s) 1135
BmiI GGNNCC 4 cut(s) 93, 439, 478, 1121
BmrFI CCNGG 6 cut(s) 49, 58, 264, 281, 397, 999
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 834
BmuI ACTGGG 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 4 cut(s) 58, 264, 281, 397
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 4 cut(s) 48, 194, 405, 633
BsaWI WCCGGW 1 cut(s) 1116
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 700
Bse1I ACTGG 3 cut(s) 295, 823, 1138
Bse21I CCTNAGG 1 cut(s) 350
BseBI CCWGG 2 cut(s) 49, 999
BseDI CCNNGG 4 cut(s) 48, 194, 405, 633
BseGI GGATG 2 cut(s) 415, 922
BseLI CCNNNNNNNGG 2 cut(s) 584, 700
BseMII CTCAG 2 cut(s) 768, 1062
BseNI ACTGG 3 cut(s) 295, 823, 1138
BseSI GKGCMC 2 cut(s) 311, 818
BseXI GCAGC 4 cut(s) 25, 512, 616, 716
Bsh1236I CGCG 1 cut(s) 635
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 3 cut(s) 91, 437, 1119
BsiHKAI GWGCWC 2 cut(s) 311, 818
BsiSI CCGG 5 cut(s) 57, 263, 281, 397, 1117
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 584, 700
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 311, 818
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BspACI CCGC 6 cut(s) 41, 65, 534, 633, 635, 985
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 769, 1063
BspFNI CGCG 1 cut(s) 635
BspHI TCATGA 2 cut(s) 208, 859
BspLI GGNNCC 4 cut(s) 93, 439, 478, 1121
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 118, 674
BspT107I GGYRCC 3 cut(s) 91, 437, 1119
BspTNI GGTCTC 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 3 cut(s) 295, 823, 1138
BssECI CCNNGG 4 cut(s) 48, 194, 405, 633
BssMI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 49, 999
Bst4CI ACNGT 2 cut(s) 463, 562
BstAPI GCANNNNNTGC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 350, 527, 777, 1071
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 2 cut(s) 415, 922
BstFNI CGCG 1 cut(s) 635
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 9 cut(s) 27, 126, 492, 669, 682, 748, 840, 994, 1077
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BstMWI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
BstNI CCWGG 2 cut(s) 49, 999
BstNSI RCATGY 2 cut(s) 473, 1099
BstSCI CCNGG 6 cut(s) 47, 56, 262, 279, 395, 997
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 2 cut(s) 311, 818
BstUI CGCG 1 cut(s) 635
BstV1I GCAGC 4 cut(s) 25, 512, 616, 716
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 2 cut(s) 415, 922
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 5 cut(s) 9, 147, 288, 459, 816
Cac8I GCNNGC 1 cut(s) 16
CciI TCATGA 2 cut(s) 208, 859
CfoI GCGC 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 1135
Cfr42I CCGCGG 1 cut(s) 636
CseI GACGC 2 cut(s) 839, 1088
CsiI ACCWGGT 1 cut(s) 997
Csp6I GTAC 8 cut(s) 113, 372, 438, 543, 881, 976, 1015, 1093
CviAII CATG 8 cut(s) 107, 209, 272, 470, 860, 1018, 1096, 1132
CviQI GTAC 8 cut(s) 113, 372, 438, 543, 881, 976, 1015, 1093
DdeI CTNAG 4 cut(s) 350, 527, 777, 1071
DpnI GATC 9 cut(s) 26, 125, 491, 668, 681, 747, 839, 993, 1076
DpnII GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 1135
Eco57I CTGAAG 1 cut(s) 201
Eco81I CCTNAGG 1 cut(s) 350
EcoRI GAATTC 2 cut(s) 728, 911
EcoRII CCWGG 2 cut(s) 47, 997
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 8 cut(s) 110, 212, 275, 473, 863, 1021, 1099, 1135
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 189
FatI CATG 8 cut(s) 106, 208, 271, 469, 859, 1017, 1095, 1131
FauI CCCGC 1 cut(s) 992
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 705
FokI GGATG 2 cut(s) 422, 909
Fsp4HI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 705
FspBI CTAG 1 cut(s) 1103
GlaI GCGC 1 cut(s) 504
GluI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 705
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 57, 263, 281, 397, 1117
HgaI GACGC 2 cut(s) 839, 1088
HhaI GCGC 1 cut(s) 505
Hin1II CATG 8 cut(s) 110, 212, 275, 473, 863, 1021, 1099, 1135
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 3 cut(s) 736, 949, 1113
HpaII CCGG 5 cut(s) 57, 263, 281, 397, 1117
HphI GGTGA 3 cut(s) 34, 733, 781
Hpy166II GTNNAC 6 cut(s) 157, 288, 309, 344, 816, 1039
Hpy188I TCNGA 7 cut(s) 198, 325, 608, 684, 927, 954, 1072
Hpy188III TCNNGA 7 cut(s) 209, 219, 509, 733, 764, 860, 937
Hpy8I GTNNAC 6 cut(s) 157, 288, 309, 344, 816, 1039
Hpy99I CGWCG 1 cut(s) 833
HpyAV CCTTC 1 cut(s) 632
HpyCH4III ACNGT 2 cut(s) 463, 562
HpyCH4V TGCA 9 cut(s) 33, 300, 309, 500, 557, 572, 644, 816, 1131
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
HpyF3I CTNAG 4 cut(s) 350, 527, 777, 1071
Hsp92II CATG 8 cut(s) 110, 212, 275, 473, 863, 1021, 1099, 1135
HspAI GCGC 1 cut(s) 503
KpnI GGTACC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 24
KspI CCGCGG 1 cut(s) 636
Kzo9I GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
LmnI GCTCC 1 cut(s) 822
Lsp1109I GCAGC 4 cut(s) 25, 512, 616, 716
LweI GCATC 1 cut(s) 834
MabI ACCWGGT 1 cut(s) 997
MaeI CTAG 1 cut(s) 1103
MaeIII GTNAC 1 cut(s) 247
MalI GATC 9 cut(s) 26, 125, 491, 668, 681, 747, 839, 993, 1076
MboI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
MboII GAAGA 2 cut(s) 133, 499
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 311, 818
MluCI AATT 5 cut(s) 222, 420, 728, 911, 1043
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 2 cut(s) 714, 868
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 2 cut(s) 132, 357
MslI CAYNNNNRTG 2 cut(s) 150, 1130
MspA1I CMGCKG 2 cut(s) 67, 635
MspI CCGG 5 cut(s) 57, 263, 281, 397, 1117
MspR9I CCNGG 6 cut(s) 49, 58, 264, 281, 397, 999
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 2 cut(s) 49, 999
MvnI CGCG 1 cut(s) 635
MwoI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
NciI CCSGG 4 cut(s) 58, 264, 281, 397
NdeII GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
NlaIII CATG 8 cut(s) 110, 212, 275, 473, 863, 1021, 1099, 1135
NlaIV GGNNCC 4 cut(s) 93, 439, 478, 1121
NspI RCATGY 2 cut(s) 473, 1099
PagI TCATGA 2 cut(s) 208, 859
PciI ACATGT 1 cut(s) 469
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 2 cut(s) 736, 1113
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 6 cut(s) 40, 66, 502, 631, 634, 706
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
PscI ACATGT 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 47, 997
PspGI CCWGG 2 cut(s) 47, 997
PspN4I GGNNCC 4 cut(s) 93, 439, 478, 1121
PspPI GGNCC 1 cut(s) 1135
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 8 cut(s) 114, 373, 439, 544, 882, 977, 1016, 1094
RsaNI GTAC 8 cut(s) 113, 372, 438, 543, 881, 976, 1015, 1093
RseI CAYNNNNRTG 2 cut(s) 150, 1130
SacII CCGCGG 1 cut(s) 636
SaqAI TTAA 2 cut(s) 132, 357
SatI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 705
Sau3AI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
Sau96I GGNCC 1 cut(s) 1135
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 6 cut(s) 49, 58, 264, 281, 397, 999
SduI GDGCHC 2 cut(s) 311, 818
SexAI ACCWGGT 1 cut(s) 997
SfaNI GCATC 1 cut(s) 834
SfcI CTRYAG 1 cut(s) 498
Sfr303I CCGCGG 1 cut(s) 636
SgrBI CCGCGG 1 cut(s) 636
SinI GGWCC 1 cut(s) 1135
SmiMI CAYNNNNRTG 2 cut(s) 150, 1130
Sse9I AATT 5 cut(s) 222, 420, 728, 911, 1043
SsiI CCGC 6 cut(s) 41, 65, 534, 633, 635, 985
SspMI CTAG 1 cut(s) 1103
StyD4I CCNGG 6 cut(s) 47, 56, 262, 279, 395, 997
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 463, 562
TaqI TCGA 1 cut(s) 828
TasI AATT 5 cut(s) 222, 420, 728, 911, 1043
TatI WGTACW 5 cut(s) 542, 880, 975, 1014, 1092
TauI GCSGC 2 cut(s) 67, 635
TfiI GAWTC 2 cut(s) 736, 1113
Tru1I TTAA 2 cut(s) 132, 357
Tru9I TTAA 2 cut(s) 132, 357
TscAI CASTG 5 cut(s) 16, 154, 295, 466, 823
TseI GCWGC 4 cut(s) 38, 500, 629, 704
TspDTI ATGAA 6 cut(s) 123, 225, 848, 924, 944, 1034
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 5 cut(s) 16, 154, 295, 466, 823
Tth111I GACNNNGTC 1 cut(s) 272
VneI GTGCAC 2 cut(s) 307, 814
VpaK11BI GGWCC 1 cut(s) 1135
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 728, 911, 1043
XceI RCATGY 2 cut(s) 473, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 1 cut(s) 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.