Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

15517001 .. 15518222

Gene Structure 1222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATGGATCGTATGAACCTTCAATATCTGATATTGGTTTGGTGTCCCAAAGTTCGATAAATGGAAGTGACTGTAATGAAATGCAATATAAGGGAGTTAGGTATGATAAGTTGTCTACAGAAGATCTTAAAGGGCAAGAGTTTAAGACTGTGGAGGAAGCTGAGTCCTTTTACAATGAGCGTATGAATGAGATTCCTTCATCCTTATTAATGAAGAGGTGGACGAAGTCTGCAAAATCTGATACGCAAATATCAGTTCATGAAGACAACGTCCCTAATGAAGCTATAGAATTTGCCAGGTACGGCGATTTAAATTGTTTTGGAAGTAAACTGTGTTTTCTTGCATCGAAAACAAAGGAGGGCACGGACATCCTCAACAGAGAATTCATCAGAGTAGAGCCCATACTATTAGACTTGTGGAAGCAAGAGAAAGAAAAAATTGTCACTCCAGAGCACTGCAGTAATATTATAAAAGATCCAATCAAGGAAGATGATATCCATTTGAAAAACCGGTCATCTTCAACCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

176

Amino Acids

20.12

Weight (kDa)

4.93

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	116
AclWI	GGATC	2 cut(s)	16, 470
AcsI	RAATTY	2 cut(s)	290, 383
AfaI	GTAC	1 cut(s)	302
AgeI	ACCGGT	1 cut(s)	510
AgsI	TTSAA	3 cut(s)	24, 505, 522
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	2 cut(s)	161, 284
AluI	AGCT	2 cut(s)	161, 284
Alw21I	GWGCWC	1 cut(s)	456
AlwI	GGATC	2 cut(s)	16, 470
ApoI	RAATTY	2 cut(s)	290, 383
AseI	ATTAAT	1 cut(s)	209
AsiGI	ACCGGT	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	456
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	298
BfmI	CTRYAG	3 cut(s)	117, 285, 457
BglII	AGATCT	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	510
Bse118I	RCCGGY	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	298
BseGI	GGATG	3 cut(s)	10, 200, 369
BseMII	CTCAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	365
BshTI	ACCGGT	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	31, 257
BsmFI	GGGAC	2 cut(s)	31, 257
Bsp1286I	GDGCHC	3 cut(s)	365, 402, 456
Bsp143I	GATC	3 cut(s)	8, 124, 475
BspCNI	CTCAG	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	461
BspPI	GGATC	2 cut(s)	16, 470
BsrFI	RCCGGY	1 cut(s)	510
BssAI	RCCGGY	1 cut(s)	510
BssMI	GATC	3 cut(s)	8, 124, 475
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	74, 151, 333
Bst6I	CTCTTC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	10, 200, 369
BstKTI	GATC	3 cut(s)	11, 127, 478
BstMBI	GATC	3 cut(s)	8, 124, 475
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	3 cut(s)	117, 285, 457
BstSLI	GKGCMC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	2 cut(s)	124, 475
BstYI	RGATCY	2 cut(s)	124, 475
BtsCI	GGATG	3 cut(s)	10, 200, 369
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	454
CciI	TCATGA	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	301
CspAI	ACCGGT	1 cut(s)	510
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	3 cut(s)	161, 284, 400
CviKI_1	RGCY	3 cut(s)	161, 284, 400
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	10, 126, 477
DpnII	GATC	3 cut(s)	8, 124, 475
DraI	TTTAAA	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	1 cut(s)	263
FaqI	GGGAC	2 cut(s)	31, 257
FatI	CATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	116
FokI	GGATG	3 cut(s)	17, 187, 356
FriOI	GRGCYC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	432
HapII	CCGG	1 cut(s)	511
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	2 cut(s)	164, 193
HpaII	CCGG	1 cut(s)	511
Hpy166II	GTNNAC	3 cut(s)	117, 222, 329
Hpy188I	TCNGA	3 cut(s)	31, 241, 392
Hpy188III	TCNNGA	2 cut(s)	260, 449
Hpy8I	GTNNAC	3 cut(s)	117, 222, 329
HpyAV	CCTTC	2 cut(s)	30, 207
HpyCH4III	ACNGT	3 cut(s)	74, 151, 333
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	85, 233, 344, 459
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	3 cut(s)	8, 124, 475
LpnPI	CCDG	4 cut(s)	283, 310, 462, 524
LweI	GCATC	1 cut(s)	353
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	68, 442
MalI	GATC	3 cut(s)	10, 126, 477
MboI	GATC	3 cut(s)	8, 124, 475
MboII	GAAGA	5 cut(s)	134, 226, 275, 500, 510
MflI	RGATCY	2 cut(s)	124, 475
MhlI	GDGCHC	3 cut(s)	365, 402, 456
MluCI	AATT	4 cut(s)	290, 313, 383, 438
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	148, 210, 352, 383
MseI	TTAA	4 cut(s)	129, 144, 209, 311
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	298
NdeII	GATC	3 cut(s)	8, 124, 475
NlaIII	CATG	1 cut(s)	263
NmuCI	GTSAC	2 cut(s)	68, 442
PagI	TCATGA	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	193
PflFI	GACNNNGTC	2 cut(s)	226, 269
PinAI	ACCGGT	1 cut(s)	510
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	124, 475
PsyI	GACNNNGTC	2 cut(s)	226, 269
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	4 cut(s)	129, 144, 209, 311
Sau3AI	GATC	3 cut(s)	8, 124, 475
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	3 cut(s)	365, 402, 456
SetI	ASST	7 cut(s)	22, 104, 163, 221, 273, 286, 302
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	3 cut(s)	117, 285, 457
SmiI	ATTTAAAT	1 cut(s)	312
Sse9I	AATT	4 cut(s)	290, 313, 383, 438
SspI	AATATT	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	296
SwaI	ATTTAAAT	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	74, 151, 333
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	56, 347
TasI	AATT	4 cut(s)	290, 313, 383, 438
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	4 cut(s)	129, 144, 209, 311
Tru9I	TTAA	4 cut(s)	129, 144, 209, 311
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	68, 442
Tsp45I	GTSAC	2 cut(s)	68, 442
TspDTI	ATGAA	9 cut(s)	30, 93, 189, 200, 227, 248, 276, 294, 376
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	461
Tth111I	GACNNNGTC	2 cut(s)	226, 269
VspI	ATTAAT	1 cut(s)	209
XapI	RAATTY	2 cut(s)	290, 383
XmiI	GTMKAC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.