RLG00000013325

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
29909354 .. 29912858
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013325

Sequence Viewer

Length: 1107 bp
ATGTCCAACACTGCTGCCAAGGTGATCAAGTGCAAAGCTGCGGTGGCCTGGGAAGCTGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTATGCTTGAAGATCCTCTTTACGGCTCTATGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAACATCCACTGTTCCCTCGGATTTTAGGTCATGAAGCTGGAGGAATCGTGGAAAGCGTGGGGGAGGGTGTAACTGAACTCCAACCGGGCGACCATGTCCTCCTGGTGTTCACTGGAGAATGCAAGGAGTGCGCAGATTGTAAGTCAGAGGAAAGCAACATGTGTGATCTCCTAAGGATTAATACCGACAGGAGTACCATGCTCAATGACGGCCAGACCTGGTTTTCCAAGGATGGAAAGCCAATTTATCATTTTGTTGGTACCTCTACATTCAGTGAATACAGTGTTTCACATGTTGGTTCCGTTGCGAAGATCAACCCAGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATTTGTACAGGTTTTGGTGCGACTGTAAATGTTGCAAAGCCAAAAAAGGGTTCATCTGTTGCCATTTTCGGATTGGGTGCTGTTGGCCTTGCTGCTGCAGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAAAGTTTGGGGTGAATGAATTTGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAAGTGATAGCTGAGATGACCAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGATCTCTGCCTTTGAATGTGTTCATGATGGTTGGGGGGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCGTTTAAAACCCATCCAATGAACTTCTTGAATGAGAGGACTCTTAAGGGTACTTTCTATGGTAACTACAAGCCCCGCACTGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGATGGAATTGGACAAATTTATCACTCACTCTGTTTCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGTTGGCAGGACAGGGAATCCGGTGCATAATCCGCATGGAGGATTAG

Protein Analysis

369

Amino Acids

39.86

Weight (kDa)

5.92

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 164 2e-19 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 203 - 325 1.5e-16 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 310
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 2 cut(s) 91, 437
AccI GTMKAC 1 cut(s) 156
AciI CCGC 5 cut(s) 41, 65, 534, 949, 1093
AclWI GGATC 2 cut(s) 118, 674
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 3 cut(s) 537, 692, 1007
AfaI GTAC 7 cut(s) 373, 439, 544, 846, 925, 980, 1058
AfiI CCNNNNNNNGG 3 cut(s) 133, 584, 1099
AflII CTTAAG 1 cut(s) 917
AflIII ACRYGT 3 cut(s) 336, 469, 1059
AgsI TTSAA 4 cut(s) 121, 663, 815, 904
AjnI CCWGG 5 cut(s) 47, 279, 395, 792, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AluBI AGCT 4 cut(s) 38, 56, 215, 740
AluI AGCT 4 cut(s) 38, 56, 215, 740
Alw21I GWGCWC 1 cut(s) 782
Alw44I GTGCAC 1 cut(s) 778
AlwI GGATC 2 cut(s) 118, 674
AoxI GGCC 3 cut(s) 45, 388, 622
ApaLI GTGCAC 1 cut(s) 778
ApeKI GCWGC 5 cut(s) 14, 38, 500, 629, 632
ApoI RAATTY 3 cut(s) 537, 692, 1007
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 819
Asp718I GGTACC 1 cut(s) 437
AspLEI GCGC 2 cut(s) 311, 505
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 34, 697
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BanI GGYRCC 2 cut(s) 91, 437
Bbv12I GWGCWC 1 cut(s) 782
BbvI GCAGC 4 cut(s) 25, 512, 616, 619
BccI CCATC 4 cut(s) 404, 821, 894, 988
BceAI ACGGC 2 cut(s) 150, 403
BciT130I CCWGG 5 cut(s) 49, 281, 397, 794, 963
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 506
BfrI CTTAAG 1 cut(s) 917
BisI GCNGC 6 cut(s) 15, 39, 65, 501, 630, 633
BlsI GCNGC 6 cut(s) 16, 40, 66, 502, 631, 634
Bme1390I CCNGG 6 cut(s) 49, 264, 281, 397, 794, 963
BmiI GGNNCC 3 cut(s) 93, 439, 478
BmrFI CCNGG 6 cut(s) 49, 264, 281, 397, 794, 963
BmsI GCATC 2 cut(s) 798, 862
BpmI CTGGAG 2 cut(s) 237, 312
BpuMI CCSGG 1 cut(s) 264
BsaJI CCNNGG 4 cut(s) 18, 48, 194, 405
BsaWI WCCGGW 1 cut(s) 1080
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 584, 1099
Bse1I ACTGG 2 cut(s) 295, 787
Bse21I CCTNAGG 1 cut(s) 350
BseBI CCWGG 5 cut(s) 49, 281, 397, 794, 963
BseDI CCNNGG 4 cut(s) 18, 48, 194, 405
BseGI GGATG 4 cut(s) 181, 415, 789, 886
BseLI CCNNNNNNNGG 3 cut(s) 133, 584, 1099
BseMII CTCAG 2 cut(s) 732, 1026
BseNI ACTGG 2 cut(s) 295, 787
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 4 cut(s) 25, 512, 616, 619
BseYI CCCAGC 2 cut(s) 56, 496
BshFI GGCC 3 cut(s) 47, 390, 624
BshNI GGYRCC 2 cut(s) 91, 437
BsiHKAI GWGCWC 1 cut(s) 782
BsiSI CCGG 2 cut(s) 263, 1081
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 3 cut(s) 133, 584, 1099
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 3 cut(s) 47, 390, 624
Bsp1286I GDGCHC 1 cut(s) 782
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 9 cut(s) 24, 123, 343, 489, 666, 709, 801, 955, 1038
BspACI CCGC 5 cut(s) 41, 65, 534, 949, 1093
BspANI GGCC 3 cut(s) 47, 390, 624
BspCNI CTCAG 2 cut(s) 733, 1027
BspHI TCATGA 2 cut(s) 208, 823
BspLI GGNNCC 3 cut(s) 93, 439, 478
BspMAI CTGCAG 1 cut(s) 637
BspPI GGATC 2 cut(s) 118, 674
BspT107I GGYRCC 2 cut(s) 91, 437
BspTI CTTAAG 1 cut(s) 917
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 2 cut(s) 295, 787
BssECI CCNNGG 4 cut(s) 18, 48, 194, 405
BssMI GATC 9 cut(s) 24, 123, 343, 489, 666, 709, 801, 955, 1038
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 2 cut(s) 18, 405
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 5 cut(s) 49, 281, 397, 794, 963
Bst4CI ACNGT 3 cut(s) 189, 461, 562
BstAFI CTTAAG 1 cut(s) 917
BstAPI GCANNNNNTGC 2 cut(s) 306, 641
BstAUI TGTACA 1 cut(s) 542
BstDEI CTNAG 4 cut(s) 350, 527, 741, 1035
BstF5I GGATG 4 cut(s) 181, 415, 789, 886
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 2 cut(s) 311, 505
BstKTI GATC 9 cut(s) 27, 126, 346, 492, 669, 712, 804, 958, 1041
BstMBI GATC 9 cut(s) 24, 123, 343, 489, 666, 709, 801, 955, 1038
BstMWI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 786, 1092
BstNI CCWGG 5 cut(s) 49, 281, 397, 794, 963
BstNSI RCATGY 3 cut(s) 340, 473, 1063
BstSCI CCNGG 6 cut(s) 47, 262, 279, 395, 792, 961
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 782
BstV1I GCAGC 4 cut(s) 25, 512, 616, 619
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 3 cut(s) 47, 390, 624
BtsCI GGATG 4 cut(s) 181, 415, 789, 886
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 8 cut(s) 9, 147, 185, 288, 457, 466, 780, 951
CciI TCATGA 2 cut(s) 208, 823
CfoI GCGC 2 cut(s) 311, 505
CsiI ACCWGGT 2 cut(s) 395, 961
Csp6I GTAC 7 cut(s) 372, 438, 543, 845, 924, 979, 1057
CviQI GTAC 7 cut(s) 372, 438, 543, 845, 924, 979, 1057
DdeI CTNAG 4 cut(s) 350, 527, 741, 1035
DpnI GATC 9 cut(s) 26, 125, 345, 491, 668, 711, 803, 957, 1040
DpnII GATC 9 cut(s) 24, 123, 343, 489, 666, 709, 801, 955, 1038
DraI TTTAAA 1 cut(s) 880
EaeI YGGCCR 1 cut(s) 388
Eco130I CCWWGG 2 cut(s) 18, 405
Eco81I CCTNAGG 1 cut(s) 350
EcoRII CCWGG 5 cut(s) 47, 279, 395, 792, 961
EcoT14I CCWWGG 2 cut(s) 18, 405
ErhI CCWWGG 2 cut(s) 18, 405
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 189
FauI CCCGC 1 cut(s) 956
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 6 cut(s) 15, 39, 65, 501, 630, 633
FokI GGATG 4 cut(s) 168, 422, 776, 873
Fsp4HI GCNGC 6 cut(s) 15, 39, 65, 501, 630, 633
FspI TGCGCA 1 cut(s) 310
GlaI GCGC 2 cut(s) 310, 504
GluI GCNGC 6 cut(s) 15, 39, 65, 501, 630, 633
GsaI CCCAGC 2 cut(s) 60, 500
GsuI CTGGAG 2 cut(s) 237, 312
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 3 cut(s) 47, 390, 624
HapII CCGG 2 cut(s) 263, 1081
HhaI GCGC 2 cut(s) 311, 505
Hin6I GCGC 2 cut(s) 309, 503
HinP1I GCGC 2 cut(s) 309, 503
HinfI GANTC 4 cut(s) 222, 700, 913, 1077
HpaII CCGG 2 cut(s) 263, 1081
HphI GGTGA 2 cut(s) 34, 697
Hpy166II GTNNAC 3 cut(s) 157, 288, 780
Hpy188I TCNGA 4 cut(s) 198, 325, 608, 1036
Hpy188III TCNNGA 5 cut(s) 209, 509, 728, 824, 901
Hpy8I GTNNAC 3 cut(s) 157, 288, 780
HpyAV CCTTC 1 cut(s) 632
HpyCH4III ACNGT 3 cut(s) 189, 461, 562
HpyCH4V TGCA 7 cut(s) 33, 300, 572, 635, 644, 780, 1086
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 786, 1092
HpyF3I CTNAG 4 cut(s) 350, 527, 741, 1035
HspAI GCGC 2 cut(s) 309, 503
KpnI GGTACC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 9 cut(s) 24, 123, 343, 489, 666, 709, 801, 955, 1038
Lsp1109I GCAGC 4 cut(s) 25, 512, 616, 619
LweI GCATC 2 cut(s) 798, 862
MabI ACCWGGT 2 cut(s) 395, 961
MaeIII GTNAC 2 cut(s) 247, 935
MalI GATC 9 cut(s) 26, 125, 345, 491, 668, 711, 803, 957, 1040
MboI GATC 9 cut(s) 24, 123, 343, 489, 666, 709, 801, 955, 1038
MboII GAAGA 2 cut(s) 133, 499
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 5 cut(s) 420, 537, 692, 998, 1007
MlyI GAGTC 1 cut(s) 907
MmeI TCCRAC 3 cut(s) 30, 283, 832
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 3 cut(s) 357, 879, 918
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 67
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 2 cut(s) 263, 1081
MspR9I CCNGG 6 cut(s) 49, 264, 281, 397, 794, 963
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 5 cut(s) 49, 281, 397, 794, 963
MwoI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 786, 1092
NciI CCSGG 1 cut(s) 264
NdeII GATC 9 cut(s) 24, 123, 343, 489, 666, 709, 801, 955, 1038
NlaIV GGNNCC 3 cut(s) 93, 439, 478
NsbI TGCGCA 1 cut(s) 310
NspI RCATGY 3 cut(s) 340, 473, 1063
PagI TCATGA 2 cut(s) 208, 823
PciI ACATGT 3 cut(s) 336, 469, 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 3 cut(s) 222, 700, 1077
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 6 cut(s) 16, 40, 66, 502, 631, 634
PleI GAGTC 1 cut(s) 907
PpsI GAGTC 1 cut(s) 907
PscI ACATGT 3 cut(s) 336, 469, 1059
PshBI ATTAAT 1 cut(s) 357
Psp6I CCWGG 5 cut(s) 47, 279, 395, 792, 961
PspFI CCCAGC 2 cut(s) 56, 496
PspGI CCWGG 5 cut(s) 47, 279, 395, 792, 961
PspN4I GGNNCC 3 cut(s) 93, 439, 478
PstI CTGCAG 1 cut(s) 637
PsuI RGATCY 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 7 cut(s) 373, 439, 544, 846, 925, 980, 1058
RsaNI GTAC 7 cut(s) 372, 438, 543, 845, 924, 979, 1057
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 3 cut(s) 357, 879, 918
SatI GCNGC 6 cut(s) 15, 39, 65, 501, 630, 633
Sau3AI GATC 9 cut(s) 24, 123, 343, 489, 666, 709, 801, 955, 1038
SchI GAGTC 1 cut(s) 907
ScrFI CCNGG 6 cut(s) 49, 264, 281, 397, 794, 963
SduI GDGCHC 1 cut(s) 782
SexAI ACCWGGT 2 cut(s) 395, 961
SfaNI GCATC 2 cut(s) 798, 862
SfcI CTRYAG 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 5 cut(s) 420, 537, 692, 998, 1007
SsiI CCGC 5 cut(s) 41, 65, 534, 949, 1093
StyD4I CCNGG 6 cut(s) 47, 262, 279, 395, 792, 961
StyI CCWWGG 2 cut(s) 18, 405
TaaI ACNGT 3 cut(s) 189, 461, 562
TasI AATT 5 cut(s) 420, 537, 692, 998, 1007
TatI WGTACW 4 cut(s) 542, 844, 978, 1056
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 222, 700, 1077
Tru1I TTAA 3 cut(s) 357, 879, 918
Tru9I TTAA 3 cut(s) 357, 879, 918
TscAI CASTG 8 cut(s) 16, 154, 192, 295, 457, 466, 787, 958
TseI GCWGC 5 cut(s) 14, 38, 500, 629, 632
TspDTI ATGAA 7 cut(s) 123, 225, 579, 705, 812, 908, 998
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 8 cut(s) 16, 154, 192, 295, 457, 466, 787, 958
Tth111I GACNNNGTC 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 917
VneI GTGCAC 1 cut(s) 778
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 537, 692, 1007
XceI RCATGY 3 cut(s) 340, 473, 1063
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.