Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Reverse (-)

38250855 .. 38381792

Gene Structure 130938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAATTATTAAGCACAGCATGGAATTCCAGAGCCTCTGCTATTTCATTTGCCCCACTCATCACTCCCAATAGTTGCAATACCTCTCACTTCCAACACCCTTCTCTCCCACCTCAAAGGCTTTCTTTCCCATTTTGCCCGTACCCATTTCGCTTTGTTCCCAACAAGTCCCTCACACTGCAGGCTCGCAAGCGAAACTCAGAGCCTGAGCAGCAGCCACTTGTCAGCCCAACCATGTCCAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTGGCCTGGGAAGCCGGGAAGCCGCTGGTCATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTTTAATGCTCTATGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAAACCTCTGTTCCCTCGGATTTTAGGTCATGAAGCTTCAGGAATTGTGGAAAGCGTAGGCGAGGGTGTAACTGAACTCAAACCGGGAGACCATGTCCTCCCGGTGTTCACTGGAGAATGCAAGGAGTGCACACATTGTAAGTCAGAGGAAAGCAACTTGTGTGAACTCCTAAGGATTAATACTGACAGGGGTACTATGCTCAATGACGGCAAGACCCGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTCAATACACTGTTTCACATGTTGGTTCCGTTGTGAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAGTTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCGAAAAAGGGTTCGTCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCCGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATCTGAACTCCAACCGATTTGAGGCAGCCAAGAAGTTTGGGGTGAGTGAATTCGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

334

Amino Acids

36.16

Weight (kDa)

8.9

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	113 - 242	6.1e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	284 - 331	2.3e-09	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	671
AccB1I	GGYRCC	2 cut(s)	325, 671
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	869
AciI	CCGC	5 cut(s)	275, 299, 768, 867, 869
AclWI	GGATC	2 cut(s)	352, 908
AcsI	RAATTY	2 cut(s)	25, 962
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	5 cut(s)	143, 348, 607, 673, 778
AfiI	CCNNNNNNNGG	2 cut(s)	818, 934
AflIII	ACRYGT	1 cut(s)	703
AgsI	TTSAA	2 cut(s)	355, 897
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	272, 449
AluI	AGCT	2 cut(s)	272, 449
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	495
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	352, 908
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	6 cut(s)	211, 214, 272, 734, 863, 938
ApoI	RAATTY	2 cut(s)	25, 962
AseI	ATTAAT	1 cut(s)	591
Asp718I	GGTACC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	739
AsuC2I	CCSGG	4 cut(s)	292, 498, 515, 631
AsuHPI	GGTGA	2 cut(s)	268, 967
AxyI	CCTNAGG	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	545
BanI	GGYRCC	2 cut(s)	325, 671
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	6 cut(s)	223, 226, 259, 746, 850, 950
BccI	CCATC	1 cut(s)	638
BceAI	ACGGC	1 cut(s)	637
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	4 cut(s)	292, 498, 515, 631
BcoDI	GTCTC	1 cut(s)	495
BfmI	CTRYAG	2 cut(s)	179, 732
BfoI	RGCGCY	1 cut(s)	740
BisI	GCNGC	8 cut(s)	212, 215, 273, 299, 735, 864, 867, 939
BlsI	GCNGC	8 cut(s)	213, 216, 274, 300, 736, 865, 868, 940
Bme1390I	CCNGG	5 cut(s)	283, 292, 498, 515, 631
BmiI	GGNNCC	3 cut(s)	327, 673, 712
BmrFI	CCNGG	5 cut(s)	283, 292, 498, 515, 631
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	4 cut(s)	292, 498, 515, 631
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	4 cut(s)	282, 428, 639, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	818, 934
Bse1I	ACTGG	1 cut(s)	529
Bse21I	CCTNAGG	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	4 cut(s)	282, 428, 639, 867
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	2 cut(s)	818, 934
BseMII	CTCAG	2 cut(s)	198, 213
BseNI	ACTGG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	6 cut(s)	223, 226, 259, 746, 850, 950
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	2 cut(s)	325, 671
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	4 cut(s)	291, 497, 515, 631
BslFI	GGGAC	2 cut(s)	154, 423
BslI	CCNNNNNNNGG	2 cut(s)	818, 934
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	2 cut(s)	154, 423
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	776
Bsp143I	GATC	6 cut(s)	258, 357, 723, 900, 913, 979
BspACI	CCGC	5 cut(s)	275, 299, 768, 867, 869
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	199, 212
BspFNI	CGCG	1 cut(s)	869
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	327, 673, 712
BspMAI	CTGCAG	2 cut(s)	183, 736
BspPI	GGATC	2 cut(s)	352, 908
BspT107I	GGYRCC	2 cut(s)	325, 671
BspTNI	GGTCTC	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	776
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	4 cut(s)	282, 428, 639, 867
BssMI	GATC	6 cut(s)	258, 357, 723, 900, 913, 979
BssNAI	GTATAC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	639
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	697, 796
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	776
BstC8I	GCNNGC	4 cut(s)	183, 187, 191, 250
BstDEI	CTNAG	4 cut(s)	199, 207, 584, 761
BstDSI	CCRYGG	1 cut(s)	867
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	869
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	6 cut(s)	261, 360, 726, 903, 916, 982
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	6 cut(s)	258, 357, 723, 900, 913, 979
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 278, 287, 540, 875
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	5 cut(s)	281, 290, 496, 513, 629
BstSFI	CTRYAG	2 cut(s)	179, 732
BstSLI	GKGCMC	1 cut(s)	545
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	6 cut(s)	223, 226, 259, 746, 850, 950
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BstZ17I	GTATAC	1 cut(s)	391
Bsu36I	CCTNAGG	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	867
BtsCI	GGATG	1 cut(s)	649
BtsI	GCAGTG	2 cut(s)	176, 243
BtsIMutI	CAGTG	5 cut(s)	176, 243, 381, 522, 693
Cac8I	GCNNGC	4 cut(s)	183, 187, 191, 250
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	739
Cfr42I	CCGCGG	1 cut(s)	870
Csp6I	GTAC	5 cut(s)	142, 347, 606, 672, 777
CviAII	CATG	6 cut(s)	21, 235, 341, 443, 506, 704
CviQI	GTAC	5 cut(s)	142, 347, 606, 672, 777
DdeI	CTNAG	4 cut(s)	199, 207, 584, 761
DpnI	GATC	6 cut(s)	260, 359, 725, 902, 915, 981
DpnII	GATC	6 cut(s)	258, 357, 723, 900, 913, 979
Eco130I	CCWWGG	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	584
EcoRI	GAATTC	2 cut(s)	25, 962
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	6 cut(s)	24, 238, 344, 446, 509, 707
FalI	AAGNNNNNCTT	4 cut(s)	109, 141, 347, 379
FaqI	GGGAC	2 cut(s)	154, 423
FatI	CATG	6 cut(s)	20, 234, 340, 442, 505, 703
FbaI	TGATCA	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	8 cut(s)	212, 215, 273, 299, 735, 864, 867, 939
FokI	GGATG	1 cut(s)	656
Fsp4HI	GCNGC	8 cut(s)	212, 215, 273, 299, 735, 864, 867, 939
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	8 cut(s)	212, 215, 273, 299, 735, 864, 867, 939
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	4 cut(s)	291, 497, 515, 631
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	6 cut(s)	24, 238, 344, 446, 509, 707
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	1 cut(s)	970
HpaII	CCGG	4 cut(s)	291, 497, 515, 631
HphI	GGTGA	2 cut(s)	268, 967
Hpy166II	GTNNAC	4 cut(s)	391, 522, 543, 578
Hpy188I	TCNGA	5 cut(s)	202, 432, 559, 842, 918
Hpy188III	TCNNGA	6 cut(s)	30, 443, 453, 743, 967, 998
Hpy8I	GTNNAC	4 cut(s)	391, 522, 543, 578
HpyAV	CCTTC	2 cut(s)	111, 866
HpyCH4III	ACNGT	2 cut(s)	697, 796
HpyCH4V	TGCA	9 cut(s)	78, 181, 267, 534, 543, 734, 791, 806, 878
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 278, 287, 540, 875
HpyF3I	CTNAG	4 cut(s)	199, 207, 584, 761
Hsp92II	CATG	6 cut(s)	24, 238, 344, 446, 509, 707
HspAI	GCGC	1 cut(s)	737
KpnI	GGTACC	1 cut(s)	675
Ksp22I	TGATCA	1 cut(s)	258
KspI	CCGCGG	1 cut(s)	870
Kzo9I	GATC	6 cut(s)	258, 357, 723, 900, 913, 979
Lsp1109I	GCAGC	6 cut(s)	223, 226, 259, 746, 850, 950
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	6 cut(s)	260, 359, 725, 902, 915, 981
MboI	GATC	6 cut(s)	258, 357, 723, 900, 913, 979
MboII	GAAGA	2 cut(s)	367, 733
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	5 cut(s)	5, 25, 456, 654, 962
MmeI	TCCRAC	3 cut(s)	118, 264, 948
MseI	TTAA	3 cut(s)	11, 366, 591
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	301, 869
MspI	CCGG	4 cut(s)	291, 497, 515, 631
MspR9I	CCNGG	5 cut(s)	283, 292, 498, 515, 631
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	5 cut(s)	211, 278, 287, 540, 875
NciI	CCSGG	4 cut(s)	292, 498, 515, 631
NdeII	GATC	6 cut(s)	258, 357, 723, 900, 913, 979
NlaIII	CATG	6 cut(s)	24, 238, 344, 446, 509, 707
NlaIV	GGNNCC	3 cut(s)	327, 673, 712
NspI	RCATGY	1 cut(s)	707
PagI	TCATGA	1 cut(s)	442
PciI	ACATGT	1 cut(s)	703
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	970
PflFI	GACNNNGTC	1 cut(s)	506
PkrI	GCNGC	8 cut(s)	213, 216, 274, 300, 736, 865, 868, 940
PscI	ACATGT	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	327, 673, 712
PstI	CTGCAG	2 cut(s)	183, 736
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	357
PsyI	GACNNNGTC	1 cut(s)	506
RsaI	GTAC	5 cut(s)	143, 348, 607, 673, 778
RsaNI	GTAC	5 cut(s)	142, 347, 606, 672, 777
RseI	CAYNNNNRTG	1 cut(s)	384
SacII	CCGCGG	1 cut(s)	870
SaqAI	TTAA	3 cut(s)	11, 366, 591
SatI	GCNGC	8 cut(s)	212, 215, 273, 299, 735, 864, 867, 939
Sau3AI	GATC	6 cut(s)	258, 357, 723, 900, 913, 979
ScrFI	CCNGG	5 cut(s)	283, 292, 498, 515, 631
SduI	GDGCHC	1 cut(s)	545
SfcI	CTRYAG	2 cut(s)	179, 732
Sfr303I	CCGCGG	1 cut(s)	870
SgrBI	CCGCGG	1 cut(s)	870
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	5 cut(s)	5, 25, 456, 654, 962
SsiI	CCGC	5 cut(s)	275, 299, 768, 867, 869
StyD4I	CCNGG	5 cut(s)	281, 290, 496, 513, 629
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	697, 796
TasI	AATT	5 cut(s)	5, 25, 456, 654, 962
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	2 cut(s)	301, 869
TfiI	GAWTC	1 cut(s)	970
Tru1I	TTAA	3 cut(s)	11, 366, 591
Tru9I	TTAA	3 cut(s)	11, 366, 591
TscAI	CASTG	5 cut(s)	183, 250, 388, 529, 700
TseI	GCWGC	6 cut(s)	211, 214, 272, 734, 863, 938
TspDTI	ATGAA	3 cut(s)	36, 357, 459
TspGWI	ACGGA	1 cut(s)	703
TspRI	CASTG	5 cut(s)	183, 250, 388, 529, 700
Tth111I	GACNNNGTC	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	541
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	2 cut(s)	25, 962
XceI	RCATGY	1 cut(s)	707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmiI	GTMKAC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.