Rroxscaffold_7G00191540

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
32169039 .. 32173813
4775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191540.1

Sequence Viewer

Length: 1125 bp
ATGTCCAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTGGCCTGGGAAGCTGGGAAGCCGCTGGTCATTGAGGAAGTGGATGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTTTAATGCTCTATGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAAACCTCTGTTCCCTCGGATTTTAGGTCATGAAGCTGCAGGAATTGTGGAAAGCGTAGGCGAGGGTGTAACTGAACTCCAACCGGGAGACCATGTGCTCCCGGTGTTCACTGGAGAATGCAAGGAGTGCACACATTGTAAGTCAGAGGAAAGCAACTTGTGTGAACTCCTAAGGATTAATACTGACAGAGGTACTATGCTCAATGACGGCAAGACCCGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTCAATACACTGTTTCACATGTTGGTTCCGTTGTGAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAGTTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCGAAAAGGGGTTCGTCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATCTGAACTCCAACCGATTTGAGGCAGCCAAGAAGTTTGGGGTGACTGAATTTGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATAGCTGAGATGACAAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGGAGCATCGACGCTATGATCTCTGCGTTTGAATGTGTTCATGATGGTTGGGGGGTTGCTGTACTTGTTGGAGTGCCAAAGATAGACTATGAATTCAAAACCCATCCGATGAACTTCTTGAATGAGAGGACTCTGAAGGGTGCTTTCTATGGTAAGTACAAGCCCCGCACCGATCTACCTGGTGTTGTGGAGAAGTATATGAACAAGGAGATGGAAGTGGACAAATTTATCACTCACTCTGTTTCTCTCTCTGAGATCAACAAGGCATTTGACTACATGCTGGCAGGACAGGGAATCCGGGTTTGA

Protein Analysis

374

Amino Acids

40.51

Weight (kDa)

7.14

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 164 7.8e-20 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 206 - 337 5.1e-26 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 2 cut(s) 91, 437
AccI GTMKAC 1 cut(s) 156
AciI CCGC 5 cut(s) 41, 65, 534, 635, 985
AclWI GGATC 2 cut(s) 118, 674
AcsI RAATTY 3 cut(s) 728, 911, 1043
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 6 cut(s) 114, 373, 439, 544, 882, 977
AfiI CCNNNNNNNGG 2 cut(s) 584, 700
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 5 cut(s) 121, 663, 851, 916, 940
AjnI CCWGG 2 cut(s) 47, 997
AluBI AGCT 4 cut(s) 38, 56, 215, 776
AluI AGCT 4 cut(s) 38, 56, 215, 776
Alw21I GWGCWC 3 cut(s) 279, 311, 818
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 2 cut(s) 307, 814
AlwI GGATC 2 cut(s) 118, 674
AoxI GGCC 1 cut(s) 45
ApaLI GTGCAC 2 cut(s) 307, 814
ApeKI GCWGC 6 cut(s) 38, 215, 500, 629, 632, 704
ApoI RAATTY 3 cut(s) 728, 911, 1043
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 855
Asp718I GGTACC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 505
AsuC2I CCSGG 4 cut(s) 264, 281, 397, 1118
AsuHPI GGTGA 3 cut(s) 34, 733, 781
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 2 cut(s) 311, 818
BanI GGYRCC 2 cut(s) 91, 437
Bbv12I GWGCWC 3 cut(s) 279, 311, 818
BbvI GCAGC 6 cut(s) 25, 202, 512, 616, 619, 716
BccI CCATC 4 cut(s) 404, 857, 930, 1024
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 2 cut(s) 49, 999
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 4 cut(s) 264, 281, 397, 1118
BcoDI GTCTC 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 216, 498
BfoI RGCGCY 1 cut(s) 506
BisI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
BlsI GCNGC 7 cut(s) 40, 66, 217, 502, 631, 634, 706
Bme1390I CCNGG 6 cut(s) 49, 264, 281, 397, 999, 1118
BmiI GGNNCC 3 cut(s) 93, 439, 478
BmrFI CCNGG 6 cut(s) 49, 264, 281, 397, 999, 1118
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 834
BmuI ACTGGG 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 4 cut(s) 264, 281, 397, 1118
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 48, 194, 405
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 700
Bse1I ACTGG 2 cut(s) 295, 823
Bse21I CCTNAGG 1 cut(s) 350
BseBI CCWGG 2 cut(s) 49, 999
BseDI CCNNGG 3 cut(s) 48, 194, 405
BseGI GGATG 3 cut(s) 91, 415, 922
BseLI CCNNNNNNNGG 2 cut(s) 584, 700
BseMII CTCAG 2 cut(s) 768, 1062
BseNI ACTGG 2 cut(s) 295, 823
BseSI GKGCMC 2 cut(s) 311, 818
BseXI GCAGC 6 cut(s) 25, 202, 512, 616, 619, 716
BseYI CCCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 2 cut(s) 91, 437
BsiHKAI GWGCWC 3 cut(s) 279, 311, 818
BsiSI CCGG 4 cut(s) 263, 281, 397, 1117
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 584, 700
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 279, 311, 818
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BspACI CCGC 5 cut(s) 41, 65, 534, 635, 985
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 769, 1063
BspHI TCATGA 2 cut(s) 208, 859
BspLI GGNNCC 3 cut(s) 93, 439, 478
BspMAI CTGCAG 2 cut(s) 220, 502
BspPI GGATC 2 cut(s) 118, 674
BspT107I GGYRCC 2 cut(s) 91, 437
BspTNI GGTCTC 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 2 cut(s) 295, 823
BssECI CCNNGG 3 cut(s) 48, 194, 405
BssMI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 49, 999
Bst4CI ACNGT 2 cut(s) 463, 562
BstAPI GCANNNNNTGC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 16, 1101
BstDEI CTNAG 4 cut(s) 350, 527, 777, 1071
BstF5I GGATG 3 cut(s) 91, 415, 922
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 9 cut(s) 27, 126, 492, 669, 682, 748, 840, 994, 1077
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BstMWI GCNNNNNNNGC 5 cut(s) 44, 53, 306, 641, 822
BstNI CCWGG 2 cut(s) 49, 999
BstNSI RCATGY 2 cut(s) 473, 1099
BstSCI CCNGG 6 cut(s) 47, 262, 279, 395, 997, 1116
BstSFI CTRYAG 2 cut(s) 216, 498
BstSLI GKGCMC 2 cut(s) 311, 818
BstV1I GCAGC 6 cut(s) 25, 202, 512, 616, 619, 716
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 3 cut(s) 91, 415, 922
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 5 cut(s) 9, 147, 288, 459, 816
Cac8I GCNNGC 2 cut(s) 16, 1101
CciI TCATGA 2 cut(s) 208, 859
CfoI GCGC 1 cut(s) 505
CseI GACGC 1 cut(s) 839
CsiI ACCWGGT 1 cut(s) 997
Csp6I GTAC 6 cut(s) 113, 372, 438, 543, 881, 976
CviAII CATG 6 cut(s) 107, 209, 272, 470, 860, 1096
CviQI GTAC 6 cut(s) 113, 372, 438, 543, 881, 976
DdeI CTNAG 4 cut(s) 350, 527, 777, 1071
DpnI GATC 9 cut(s) 26, 125, 491, 668, 681, 747, 839, 993, 1076
DpnII GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 974
Eco81I CCTNAGG 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 47, 997
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 6 cut(s) 110, 212, 275, 473, 863, 1099
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 189
FatI CATG 6 cut(s) 106, 208, 271, 469, 859, 1095
FauI CCCGC 1 cut(s) 992
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
FokI GGATG 3 cut(s) 98, 422, 909
Fsp4HI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
GlaI GCGC 1 cut(s) 504
GluI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 1 cut(s) 47
HapII CCGG 4 cut(s) 263, 281, 397, 1117
HgaI GACGC 1 cut(s) 839
HhaI GCGC 1 cut(s) 505
Hin1II CATG 6 cut(s) 110, 212, 275, 473, 863, 1099
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 3 cut(s) 736, 949, 1113
HpaII CCGG 4 cut(s) 263, 281, 397, 1117
HphI GGTGA 3 cut(s) 34, 733, 781
Hpy166II GTNNAC 6 cut(s) 157, 288, 309, 344, 816, 1039
Hpy188I TCNGA 7 cut(s) 198, 325, 608, 684, 927, 954, 1072
Hpy188III TCNNGA 5 cut(s) 209, 509, 764, 860, 937
Hpy8I GTNNAC 6 cut(s) 157, 288, 309, 344, 816, 1039
Hpy99I CGWCG 1 cut(s) 833
HpyAV CCTTC 2 cut(s) 632, 949
HpyCH4III ACNGT 2 cut(s) 463, 562
HpyCH4V TGCA 9 cut(s) 33, 218, 300, 309, 500, 557, 572, 644, 816
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 53, 306, 641, 822
HpyF3I CTNAG 4 cut(s) 350, 527, 777, 1071
Hsp92II CATG 6 cut(s) 110, 212, 275, 473, 863, 1099
HspAI GCGC 1 cut(s) 503
KpnI GGTACC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
LmnI GCTCC 2 cut(s) 282, 822
Lsp1109I GCAGC 6 cut(s) 25, 202, 512, 616, 619, 716
LweI GCATC 1 cut(s) 834
MabI ACCWGGT 1 cut(s) 997
MaeIII GTNAC 2 cut(s) 247, 721
MalI GATC 9 cut(s) 26, 125, 491, 668, 681, 747, 839, 993, 1076
MboI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
MboII GAAGA 2 cut(s) 133, 499
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 3 cut(s) 279, 311, 818
MluCI AATT 5 cut(s) 222, 420, 728, 911, 1043
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 4 cut(s) 30, 283, 714, 868
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 2 cut(s) 132, 357
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 4 cut(s) 263, 281, 397, 1117
MspR9I CCNGG 6 cut(s) 49, 264, 281, 397, 999, 1118
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 2 cut(s) 49, 999
MwoI GCNNNNNNNGC 5 cut(s) 44, 53, 306, 641, 822
NciI CCSGG 4 cut(s) 264, 281, 397, 1118
NdeII GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
NlaIII CATG 6 cut(s) 110, 212, 275, 473, 863, 1099
NlaIV GGNNCC 3 cut(s) 93, 439, 478
NmuCI GTSAC 1 cut(s) 721
NspI RCATGY 2 cut(s) 473, 1099
PagI TCATGA 2 cut(s) 208, 859
PciI ACATGT 1 cut(s) 469
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 2 cut(s) 736, 1113
PkrI GCNGC 7 cut(s) 40, 66, 217, 502, 631, 634, 706
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
PscI ACATGT 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 47, 997
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 2 cut(s) 47, 997
PspN4I GGNNCC 3 cut(s) 93, 439, 478
PstI CTGCAG 2 cut(s) 220, 502
PsuI RGATCY 1 cut(s) 123
RsaI GTAC 6 cut(s) 114, 373, 439, 544, 882, 977
RsaNI GTAC 6 cut(s) 113, 372, 438, 543, 881, 976
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 132, 357
SatI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
Sau3AI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 6 cut(s) 49, 264, 281, 397, 999, 1118
SduI GDGCHC 3 cut(s) 279, 311, 818
SexAI ACCWGGT 1 cut(s) 997
SfaNI GCATC 1 cut(s) 834
SfcI CTRYAG 2 cut(s) 216, 498
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 5 cut(s) 222, 420, 728, 911, 1043
SsiI CCGC 5 cut(s) 41, 65, 534, 635, 985
StyD4I CCNGG 6 cut(s) 47, 262, 279, 395, 997, 1116
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 463, 562
TaqI TCGA 1 cut(s) 828
TasI AATT 5 cut(s) 222, 420, 728, 911, 1043
TatI WGTACW 3 cut(s) 542, 880, 975
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 736, 1113
Tru1I TTAA 2 cut(s) 132, 357
Tru9I TTAA 2 cut(s) 132, 357
TscAI CASTG 5 cut(s) 16, 154, 295, 466, 823
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 6 cut(s) 38, 215, 500, 629, 632, 704
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 6 cut(s) 123, 225, 848, 924, 944, 1034
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 5 cut(s) 16, 154, 295, 466, 823
VneI GTGCAC 2 cut(s) 307, 814
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 728, 911, 1043
XceI RCATGY 2 cut(s) 473, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.