MD10G1014500.v1.1

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
1964650 .. 1968044
3395 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1014500.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGTCTACAGCTGGTCAGGTTATCAAATGCAAAGCCGCGGTGGCATGGGAAGCGGGGAAGCCACTGTCAATTGAGGAAGTGGAGGTGGCACCACCGCAGAAACATGAAGTTCGCTTGAAGATCCTCTTCACCTCTCTTTGCCACACCGATGTCTACTTCTGGGAAGCCAAAGGACAACAACCGCTGTTTCCTCGCATTTTTGGTCATGAAGCTGGAGGAGTTGTGGAAAGCGTAGGTGAGGGCGTAACCGAACTCCAGCCGGGTGACCATGTCCTCCCTGTGTTCACTGGGGAGTGCAGGGAGTGCGCGCACTGTAAGTCGGAGGAAAGCAACATGTGTGATCTGCTGAGGATCAATACTGATAGGGGTACCATGATCAATGATGGCCAGTCCAGGTTCTCCAAGGATGGAAAACCAATTTATCACTTTGTAGGTACTTCTACCTTCAGTGAATACACCGTTTGTCACGTTGGCTCAGTTGCTAAGATCAACCCGGCTGCTCCCCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATATGCACAGGTTTTGGTGCCACTGTGAATGTTGCAAAACCGAAAAAGGGTTCATCTATTGCCATCTTTGGATTGGGAGCTGTTGGTCTTGCTGCTGCTGAAGGTGCAAGGGTTTCGGGCTGTTCAAGGATCATCGGTGTTGATTTGAATCCCAGTCGCTTTGAGGAAGCCAAGAAGTTTGGGGTGAATGAATTCGTGAATCCGAAAGATCATAACAAACCTGTGCAAGAGGTGATTGCTGAGATGACCAACGGCGGAGTTGATAGGAGTGTTGAGTGCACCGGAAGCATCCAGGCTATGATCTCTGCGTTTGAATGTGTTCATGATGGTTGGGGTCTCGCTGTACTTGTTGGTGTGCCAAACAAAGATGATGCATTCAAAACCCATCCAATGAATTTCTTGAACGAGAGGACTCTTAAGGGTACCTTCTATGGTAACTACAAGCCCCGCACCGATCTACCAGGTGTTGTGGAGAAGTACATGAACAAGGAGCTGGAAGTGGAGAAATTCATCACTCATTCGGTCCCATTCGCTGAGATCAACAAAGCGTTCGACTTGATGCTTTCTGGACAGTCCATTAGGTGCATCATCTGCATGGAGAATTAG

Protein Analysis

380

Amino Acids

41.14

Weight (kDa)

6.03

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 34 - 163 1.8e-19 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 205 - 336 1.5e-26 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 368, 956
AccB1I GGYRCC 4 cut(s) 88, 368, 551, 956
AccI GTMKAC 2 cut(s) 5, 153
AccII CGCG 2 cut(s) 38, 308
AciI CCGC 8 cut(s) 36, 38, 53, 95, 182, 531, 789, 982
AclWI GGATC 3 cut(s) 115, 359, 671
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 3 cut(s) 725, 928, 1040
AcuI CTGAAG 2 cut(s) 430, 654
AfaI GTAC 5 cut(s) 370, 436, 879, 958, 1013
AfiI CCNNNNNNNGG 1 cut(s) 581
AflII CTTAAG 1 cut(s) 950
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 6 cut(s) 118, 660, 682, 848, 913, 937
AjnI CCWGG 3 cut(s) 392, 825, 994
AluBI AGCT 4 cut(s) 11, 212, 614, 1027
AluI AGCT 4 cut(s) 11, 212, 614, 1027
Alw21I GWGCWC 1 cut(s) 815
Alw26I GTCTC 1 cut(s) 875
Alw44I GTGCAC 1 cut(s) 811
AlwI GGATC 3 cut(s) 115, 359, 671
AoxI GGCC 1 cut(s) 385
ApaLI GTGCAC 1 cut(s) 811
ApeKI GCWGC 3 cut(s) 497, 626, 629
ApoI RAATTY 3 cut(s) 725, 928, 1040
Asp700I GAANNNNTTC 2 cut(s) 725, 852
Asp718I GGTACC 2 cut(s) 368, 956
AspLEI GCGC 2 cut(s) 308, 310
AspS9I GGNCC 1 cut(s) 1057
AsuC2I CCSGG 2 cut(s) 261, 494
AsuHPI GGTGA 5 cut(s) 121, 248, 275, 730, 778
AvaII GGWCC 1 cut(s) 1057
BaeGI GKGCMC 1 cut(s) 815
BalI TGGCCA 1 cut(s) 387
BanI GGYRCC 4 cut(s) 88, 368, 551, 956
Bbv12I GWGCWC 1 cut(s) 815
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 3 cut(s) 484, 613, 616
BccI CCATC 5 cut(s) 377, 401, 605, 854, 927
BceAI ACGGC 1 cut(s) 802
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciT130I CCWGG 3 cut(s) 394, 827, 996
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 2 cut(s) 261, 494
BcoDI GTCTC 1 cut(s) 875
BfmI CTRYAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 950
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 4 cut(s) 36, 498, 627, 630
BlsI GCNGC 4 cut(s) 37, 499, 628, 631
Bme1390I CCNGG 5 cut(s) 261, 394, 494, 827, 996
Bme18I GGWCC 1 cut(s) 1057
BmgT120I GGNCC 1 cut(s) 1057
BmiI GGNNCC 5 cut(s) 90, 370, 553, 958, 1059
BmrFI CCNGG 5 cut(s) 261, 394, 494, 827, 996
BmrI ACTGGG 2 cut(s) 297, 681
BmsI GCATC 4 cut(s) 831, 895, 1083, 1128
BmuI ACTGGG 2 cut(s) 297, 681
BpmI CTGGAG 2 cut(s) 234, 239
Bpu10I CCTNAGC 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 261, 494
BsaBI GATNNNNATC 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 2 cut(s) 36, 402
BsaWI WCCGGW 1 cut(s) 815
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 3 cut(s) 292, 388, 687
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 3 cut(s) 394, 827, 996
BseDI CCNNGG 2 cut(s) 36, 402
BseGI GGATG 3 cut(s) 412, 822, 919
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 4 cut(s) 338, 489, 765, 1059
BseNI ACTGG 3 cut(s) 292, 388, 687
BsePI GCGCGC 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 3 cut(s) 484, 613, 616
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 2 cut(s) 38, 308
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 4 cut(s) 88, 368, 551, 956
BsiHKAI GWGCWC 1 cut(s) 815
BsiSI CCGG 3 cut(s) 260, 494, 816
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 875
BsmFI GGGAC 1 cut(s) 1043
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 875
Bsp1286I GDGCHC 1 cut(s) 815
BspACI CCGC 8 cut(s) 36, 38, 53, 95, 182, 531, 789, 982
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 4 cut(s) 339, 488, 766, 1060
BspFNI CGCG 2 cut(s) 38, 308
BspHI TCATGA 2 cut(s) 205, 856
BspLI GGNNCC 5 cut(s) 90, 370, 553, 958, 1059
BspPI GGATC 3 cut(s) 115, 359, 671
BspT107I GGYRCC 4 cut(s) 88, 368, 551, 956
BspTI CTTAAG 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 875
BsrI ACTGG 3 cut(s) 292, 388, 687
BssECI CCNNGG 2 cut(s) 36, 402
BssHII GCGCGC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 3 cut(s) 394, 827, 996
Bst4CI ACNGT 5 cut(s) 66, 314, 460, 559, 1107
Bst6I CTCTTC 1 cut(s) 131
BstAFI CTTAAG 1 cut(s) 950
BstAPI GCANNNNNTGC 2 cut(s) 303, 1125
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 6 cut(s) 347, 475, 483, 524, 774, 1068
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 3 cut(s) 412, 822, 919
BstFNI CGCG 2 cut(s) 38, 308
BstHHI GCGC 2 cut(s) 308, 310
BstMAI GTCTC 1 cut(s) 875
BstMWI GCNNNNNNNGC 7 cut(s) 41, 50, 303, 537, 638, 819, 1125
BstNI CCWGG 3 cut(s) 394, 827, 996
BstNSI RCATGY 1 cut(s) 337
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 5 cut(s) 259, 392, 492, 825, 994
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 815
BstUI CGCG 2 cut(s) 38, 308
BstV1I GCAGC 3 cut(s) 484, 613, 616
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 412, 822, 919
BtsIMutI CAGTG 5 cut(s) 62, 285, 310, 454, 555
Cac8I GCNNGC 1 cut(s) 308
CciI TCATGA 2 cut(s) 205, 856
CfoI GCGC 2 cut(s) 308, 310
Cfr13I GGNCC 1 cut(s) 1057
Cfr42I CCGCGG 1 cut(s) 39
CsiI ACCWGGT 1 cut(s) 994
Csp6I GTAC 5 cut(s) 369, 435, 878, 957, 1012
CviAII CATG 9 cut(s) 45, 104, 206, 269, 334, 373, 857, 1015, 1129
CviQI GTAC 5 cut(s) 369, 435, 878, 957, 1012
DdeI CTNAG 6 cut(s) 347, 475, 483, 524, 774, 1068
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 804
Eco130I CCWWGG 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 875
Eco47I GGWCC 1 cut(s) 1057
Eco57I CTGAAG 2 cut(s) 430, 654
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 392, 825, 994
EcoT14I CCWWGG 1 cut(s) 402
EcoT22I ATGCAT 1 cut(s) 910
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 9 cut(s) 48, 107, 209, 272, 337, 376, 860, 1018, 1132
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 944, 976
FaqI GGGAC 1 cut(s) 1043
FatI CATG 9 cut(s) 44, 103, 205, 268, 333, 372, 856, 1014, 1128
FauI CCCGC 2 cut(s) 46, 989
FbaI TGATCA 1 cut(s) 375
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 4 cut(s) 36, 498, 627, 630
FokI GGATG 3 cut(s) 419, 809, 906
Fsp4HI GCNGC 4 cut(s) 36, 498, 627, 630
GlaI GCGC 2 cut(s) 307, 309
GluI GCNGC 4 cut(s) 36, 498, 627, 630
GsuI CTGGAG 2 cut(s) 234, 239
HaeIII GGCC 1 cut(s) 387
HapII CCGG 3 cut(s) 260, 494, 816
HhaI GCGC 2 cut(s) 308, 310
Hin1II CATG 9 cut(s) 48, 107, 209, 272, 337, 376, 860, 1018, 1132
Hin6I GCGC 2 cut(s) 306, 308
HinP1I GCGC 2 cut(s) 306, 308
HinfI GANTC 3 cut(s) 682, 733, 946
HpaII CCGG 3 cut(s) 260, 494, 816
HphI GGTGA 5 cut(s) 121, 248, 275, 730, 778
Hpy166II GTNNAC 4 cut(s) 6, 154, 285, 813
Hpy188I TCNGA 2 cut(s) 322, 738
Hpy188III TCNNGA 5 cut(s) 206, 730, 857, 934, 1101
Hpy8I GTNNAC 4 cut(s) 6, 154, 285, 813
HpyAV CCTTC 3 cut(s) 454, 629, 970
HpyCH4III ACNGT 5 cut(s) 66, 314, 460, 559, 1107
HpyCH4IV ACGT 1 cut(s) 468
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 50, 303, 537, 638, 819, 1125
HpyF3I CTNAG 6 cut(s) 347, 475, 483, 524, 774, 1068
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 9 cut(s) 48, 107, 209, 272, 337, 376, 860, 1018, 1132
HspAI GCGC 2 cut(s) 306, 308
KpnI GGTACC 2 cut(s) 372, 960
Ksp22I TGATCA 1 cut(s) 375
KspI CCGCGG 1 cut(s) 39
LmnI GCTCC 3 cut(s) 505, 611, 1024
Lsp1109I GCAGC 3 cut(s) 484, 613, 616
LweI GCATC 4 cut(s) 831, 895, 1083, 1128
MabI ACCWGGT 1 cut(s) 994
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 4 cut(s) 244, 263, 464, 968
MboII GAAGA 2 cut(s) 118, 130
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 815
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 6 cut(s) 69, 417, 725, 928, 1040, 1135
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 1 cut(s) 940
MmeI TCCRAC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 387
Mph1103I ATGCAT 1 cut(s) 910
MroXI GAANNNNTTC 2 cut(s) 725, 852
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 951
MslI CAYNNNNRTG 2 cut(s) 147, 1127
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 3 cut(s) 11, 38, 184
MspCI CTTAAG 1 cut(s) 950
MspI CCGG 3 cut(s) 260, 494, 816
MspR9I CCNGG 5 cut(s) 261, 394, 494, 827, 996
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 3 cut(s) 394, 827, 996
MvnI CGCG 2 cut(s) 38, 308
MwoI GCNNNNNNNGC 7 cut(s) 41, 50, 303, 537, 638, 819, 1125
NciI CCSGG 2 cut(s) 261, 494
NlaIII CATG 9 cut(s) 48, 107, 209, 272, 337, 376, 860, 1018, 1132
NlaIV GGNNCC 5 cut(s) 90, 370, 553, 958, 1059
NmuCI GTSAC 2 cut(s) 263, 464
NsiI ATGCAT 1 cut(s) 910
NspI RCATGY 1 cut(s) 337
PagI TCATGA 2 cut(s) 205, 856
PauI GCGCGC 1 cut(s) 306
PciI ACATGT 1 cut(s) 333
PctI GAATGC 1 cut(s) 908
PdmI GAANNNNTTC 2 cut(s) 725, 852
PfeI GAWTC 2 cut(s) 682, 733
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 37, 499, 628, 631
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
PscI ACATGT 1 cut(s) 333
Psp6I CCWGG 3 cut(s) 392, 825, 994
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 3 cut(s) 392, 825, 994
PspN4I GGNNCC 5 cut(s) 90, 370, 553, 958, 1059
PspPI GGNCC 1 cut(s) 1057
PsuI RGATCY 1 cut(s) 120
PsyI GACNNNGTC 1 cut(s) 269
PteI GCGCGC 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 5 cut(s) 370, 436, 879, 958, 1013
RsaNI GTAC 5 cut(s) 369, 435, 878, 957, 1012
RseI CAYNNNNRTG 2 cut(s) 147, 1127
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 951
SatI GCNGC 4 cut(s) 36, 498, 627, 630
Sau96I GGNCC 1 cut(s) 1057
SchI GAGTC 1 cut(s) 940
ScrFI CCNGG 5 cut(s) 261, 394, 494, 827, 996
SduI GDGCHC 1 cut(s) 815
SexAI ACCWGGT 1 cut(s) 994
SfaNI GCATC 4 cut(s) 831, 895, 1083, 1128
SfcI CTRYAG 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 1 cut(s) 1057
SmiMI CAYNNNNRTG 2 cut(s) 147, 1127
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 6 cut(s) 69, 417, 725, 928, 1040, 1135
SsiI CCGC 8 cut(s) 36, 38, 53, 95, 182, 531, 789, 982
StyD4I CCNGG 5 cut(s) 259, 392, 492, 825, 994
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 5 cut(s) 66, 314, 460, 559, 1107
TaiI ACGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 1086
TaqII GACCGA 1 cut(s) 1045
TasI AATT 6 cut(s) 69, 417, 725, 928, 1040, 1135
TatI WGTACW 2 cut(s) 877, 1011
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 682, 733
Tru1I TTAA 1 cut(s) 951
Tru9I TTAA 1 cut(s) 951
TscAI CASTG 5 cut(s) 69, 292, 317, 454, 562
TseFI GTSAC 2 cut(s) 263, 464
TseI GCWGC 3 cut(s) 497, 626, 629
Tsp45I GTSAC 2 cut(s) 263, 464
TspDTI ATGAA 8 cut(s) 120, 222, 576, 738, 845, 941, 1031, 1033
TspRI CASTG 5 cut(s) 69, 292, 317, 454, 562
Tth111I GACNNNGTC 1 cut(s) 269
Vha464I CTTAAG 1 cut(s) 950
VneI GTGCAC 1 cut(s) 811
VpaK11BI GGWCC 1 cut(s) 1057
XapI RAATTY 3 cut(s) 725, 928, 1040
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmiI GTMKAC 2 cut(s) 5, 153
XmnI GAANNNNTTC 2 cut(s) 725, 852
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.