Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

12948248 .. 12951335

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14760.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCAAGTACTGAGGGAAAGGTCATATGCTGCAGAGCTGCTGTGGCATGGGAAGCAGGGAAGCCATTAGTGATTGAAGAAGTAGAGGTAGCACCTCCTCAGGCTAATGAAGTTCGTGTCAAGATTCTTTATACCTCCTTGTGCCATACTGACGTCTACTTCTGGGAAGCCAAGGGACAAAACCCTTTATTTCCAAGGATCTATGGCCATGAAGCAGGAGGGATTGTGGAGAGTGTTGGTGAAGGGGTGACTGATCTCAAAGCGGGTGATCATGTGCTCCCGGTGTTCACTGGGGAATGTAAGGAGTGTGATCACTGCAAATCAGAAGAGAGTAACATGTGTGACCTGCTCAGGATAAACACAGACAGAGGAGTGATGCTTAGTGATGGAGAATCAAGGTTTTCGATTAAGGGAAAACCTATATACCACTTTGTTGGGACTTCAACTTTTAGTGAGTACACCGTGACTCATGTTGGCTGCCTTGCCAAGATCAACCCCAAAGCTCCTCTAGACAAAGTTTGTGTCCTCAGCTGTGGAATCTCAACTGGTTTGGGAGCTACTCTTAATGTTGCAAAACCAAAAAAGGGCTCAACAGTGGCTGTGTTTGGATTGGGAGCTGTAGGCCTTGCAGCTGCTGAAGGAGCCCGGATGGCTGGGGCGTCAAGAATTATTGGTGTTGATTTGACTTCCAACAGATTTGAAGAAGCTAAGAAGTTTGGTATCACCGAATTTGTGAACCCCAAAGACCACAAGAAACCAGTTCAAGAGGTGATTGCTGAGCTGACCAATGGAGGAGTTGATCGAAGCATTGAATGCACTGGAAATATTCAATCCATTATATCTGCATTTGAATCTGTCCATGATGGTTGGGGTGTTGCTGTTCTTGTGGGATTGCCACCCAAAGATGCTGTTTTCACGACTCATCCAATGAACTTTCTGAATGAGAGGACTCTCAAGGGAACCTTCTTCGGAAACTACAAGCCACGAACTGACATTCCCTCTGTTGTGGAGAAGTACATGAACAAGGAACTGGAGCTGGACAAATTCATCACCCATCAACTCCCATTCTCACAAATCAACAAGGCGTTTGACTACATGCTTAAAGGGGAAGGTATTCGTTGCATAATTACCATGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00592 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

381

Amino Acids

41.32

Weight (kDa)

5.98

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	94 - 225	2.2e-27	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	728, 1043
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	2 cut(s)	153, 659
AfaI	GTAC	3 cut(s)	10, 458, 1016
AfiI	CCNNNNNNNGG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	7 cut(s)	77, 444, 701, 764, 812, 830, 851
AloI	GAACNNNNNNTCC	2 cut(s)	979, 1011
AluBI	AGCT	9 cut(s)	38, 503, 531, 557, 617, 632, 707, 781, 1036
AluI	AGCT	9 cut(s)	38, 503, 531, 557, 617, 632, 707, 781, 1036
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	2 cut(s)	599, 635
AoxI	GGCC	2 cut(s)	205, 622
ApeKI	GCWGC	5 cut(s)	30, 38, 477, 629, 632
ApoI	RAATTY	2 cut(s)	728, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
Asp700I	GAANNNNTTC	1 cut(s)	1113
AsuC2I	CCSGG	2 cut(s)	281, 646
AsuHPI	GGTGA	6 cut(s)	251, 259, 278, 715, 781, 1042
AxyI	CCTNAGG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	590, 646
Bbv12I	GWGCWC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	527
BbvI	GCAGC	5 cut(s)	17, 25, 464, 619, 641
BccI	CCATC	4 cut(s)	380, 643, 857, 1062
BclI	TGATCA	2 cut(s)	268, 310
BcnI	CCSGG	2 cut(s)	281, 646
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	2 cut(s)	31, 618
BfuAI	ACCTGC	1 cut(s)	354
BglI	GCCNNNNNGGC	1 cut(s)	650
BisI	GCNGC	5 cut(s)	31, 39, 478, 630, 633
BlpI	GCTNAGC	1 cut(s)	777
BlsI	GCNGC	5 cut(s)	32, 40, 479, 631, 634
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	281, 646
BmiI	GGNNCC	2 cut(s)	643, 961
BmrFI	CCNGG	2 cut(s)	281, 646
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	366, 895
BmuI	ACTGGG	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	1052
Bpu10I	CCTNAGC	2 cut(s)	350, 527
Bpu1102I	GCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	938
BpuMI	CCSGG	2 cut(s)	281, 646
BsaHI	GRCGYC	2 cut(s)	153, 659
BsaJI	CCNNGG	3 cut(s)	171, 194, 1131
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse1I	ACTGG	5 cut(s)	295, 550, 758, 823, 1035
Bse21I	CCTNAGG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	171, 194, 1131
BseGI	GGATG	2 cut(s)	654, 922
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	4 cut(s)	113, 364, 541, 768
BseNI	ACTGG	5 cut(s)	295, 550, 758, 823, 1035
BseRI	GAGGAG	4 cut(s)	87, 384, 495, 807
BseXI	GCAGC	5 cut(s)	17, 25, 464, 619, 641
BseYI	CCCAGC	1 cut(s)	653
BshFI	GGCC	2 cut(s)	207, 624
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	281, 646
BslFI	GGGAC	2 cut(s)	189, 451
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmFI	GGGAC	2 cut(s)	189, 451
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	2 cut(s)	207, 624
Bsp1286I	GDGCHC	3 cut(s)	279, 590, 646
Bsp143I	GATC	6 cut(s)	198, 253, 268, 310, 489, 799
Bsp1720I	GCTNAGC	1 cut(s)	777
Bsp19I	CCATGG	1 cut(s)	1131
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	207, 624
BspCNI	CTCAG	5 cut(s)	4, 112, 363, 540, 769
BspLI	GGNNCC	2 cut(s)	643, 961
BspMAI	CTGCAG	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	206
BsrI	ACTGG	5 cut(s)	295, 550, 758, 823, 1035
BssECI	CCNNGG	3 cut(s)	171, 194, 1131
BssMI	GATC	6 cut(s)	198, 253, 268, 310, 489, 799
BssNI	GRCGYC	2 cut(s)	153, 659
BssT1I	CCWWGG	3 cut(s)	171, 194, 1131
Bst4CI	ACNGT	2 cut(s)	463, 595
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	2 cut(s)	153, 659
BstAPI	GCANNNNNTGC	1 cut(s)	813
BstDEI	CTNAG	7 cut(s)	12, 99, 350, 380, 527, 708, 777
BstDSI	CCRYGG	1 cut(s)	1131
BstF5I	GGATG	2 cut(s)	654, 922
BstKTI	GATC	6 cut(s)	201, 256, 271, 313, 492, 802
BstMBI	GATC	6 cut(s)	198, 253, 268, 310, 489, 799
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 53, 641, 650, 813
BstNSI	RCATGY	2 cut(s)	340, 1099
BstSCI	CCNGG	2 cut(s)	279, 644
BstSFI	CTRYAG	2 cut(s)	31, 618
BstV1I	GCAGC	5 cut(s)	17, 25, 464, 619, 641
BstX2I	RGATCY	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	207, 624
BtgI	CCRYGG	1 cut(s)	1131
BtsCI	GGATG	2 cut(s)	654, 922
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	4 cut(s)	288, 313, 600, 816
BveI	ACCTGC	1 cut(s)	354
CaiI	CAGNNNCTG	2 cut(s)	599, 635
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	3 cut(s)	9, 457, 1015
CviAII	CATG	9 cut(s)	48, 209, 272, 337, 470, 860, 1018, 1096, 1132
CviQI	GTAC	3 cut(s)	9, 457, 1015
DdeI	CTNAG	7 cut(s)	12, 99, 350, 380, 527, 708, 777
DpnI	GATC	6 cut(s)	200, 255, 270, 312, 491, 801
DpnII	GATC	6 cut(s)	198, 253, 268, 310, 489, 799
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	3 cut(s)	171, 194, 1131
Eco147I	AGGCCT	1 cut(s)	624
Eco24I	GRGCYC	2 cut(s)	590, 646
Eco57I	CTGAAG	1 cut(s)	657
Eco81I	CCTNAGG	1 cut(s)	99
EcoT14I	CCWWGG	3 cut(s)	171, 194, 1131
EcoT38I	GRGCYC	2 cut(s)	590, 646
ErhI	CCWWGG	3 cut(s)	171, 194, 1131
FaeI	CATG	9 cut(s)	51, 212, 275, 340, 473, 863, 1021, 1099, 1135
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FaqI	GGGAC	2 cut(s)	189, 451
FatI	CATG	9 cut(s)	47, 208, 271, 336, 469, 859, 1017, 1095, 1131
FauI	CCCGC	1 cut(s)	256
FauNDI	CATATG	1 cut(s)	26
FbaI	TGATCA	2 cut(s)	268, 310
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	31, 39, 478, 630, 633
FokI	GGATG	2 cut(s)	661, 909
FriOI	GRGCYC	2 cut(s)	590, 646
Fsp4HI	GCNGC	5 cut(s)	31, 39, 478, 630, 633
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	5 cut(s)	31, 39, 478, 630, 633
GsaI	CCCAGC	1 cut(s)	657
GsuI	CTGGAG	1 cut(s)	1052
HaeIII	GGCC	2 cut(s)	207, 624
HapII	CCGG	2 cut(s)	281, 646
HgaI	GACGC	1 cut(s)	648
Hin1I	GRCGYC	2 cut(s)	153, 659
Hin1II	CATG	9 cut(s)	51, 212, 275, 340, 473, 863, 1021, 1099, 1135
HinfI	GANTC	7 cut(s)	124, 392, 466, 537, 851, 919, 949
HpaII	CCGG	2 cut(s)	281, 646
HphI	GGTGA	6 cut(s)	251, 259, 278, 715, 781, 1042
Hpy166II	GTNNAC	4 cut(s)	157, 288, 459, 736
Hpy188I	TCNGA	3 cut(s)	325, 939, 971
Hpy188III	TCNNGA	6 cut(s)	121, 352, 509, 663, 764, 916
Hpy8I	GTNNAC	4 cut(s)	157, 288, 459, 736
HpyAV	CCTTC	4 cut(s)	236, 632, 973, 1103
HpyCH4III	ACNGT	2 cut(s)	463, 595
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	7 cut(s)	33, 318, 572, 629, 816, 845, 1122
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 53, 641, 650, 813
HpyF3I	CTNAG	7 cut(s)	12, 99, 350, 380, 527, 708, 777
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	2 cut(s)	153, 659
Hsp92II	CATG	9 cut(s)	51, 212, 275, 340, 473, 863, 1021, 1099, 1135
Ksp22I	TGATCA	2 cut(s)	268, 310
Kzo9I	GATC	6 cut(s)	198, 253, 268, 310, 489, 799
LmnI	GCTCC	6 cut(s)	282, 508, 554, 614, 641, 1033
Lsp1109I	GCAGC	5 cut(s)	17, 25, 464, 619, 641
LweI	GCATC	2 cut(s)	366, 895
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	4 cut(s)	247, 332, 341, 463
MalI	GATC	6 cut(s)	200, 255, 270, 312, 491, 801
MboI	GATC	6 cut(s)	198, 253, 268, 310, 489, 799
MboII	GAAGA	4 cut(s)	89, 338, 713, 958
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	3 cut(s)	279, 590, 646
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	666, 728, 1043, 1125
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	3 cut(s)	460, 913, 943
MmeI	TCCRAC	1 cut(s)	714
Mox20I	TGGCCA	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	1113
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	3 cut(s)	408, 564, 1101
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	531, 632
MspI	CCGG	2 cut(s)	281, 646
MspR9I	CCNGG	2 cut(s)	281, 646
Mva1269I	GAATGC	1 cut(s)	818
MwoI	GCNNNNNNNGC	5 cut(s)	44, 53, 641, 650, 813
NciI	CCSGG	2 cut(s)	281, 646
NcoI	CCATGG	1 cut(s)	1131
NdeI	CATATG	1 cut(s)	26
NdeII	GATC	6 cut(s)	198, 253, 268, 310, 489, 799
NlaIII	CATG	9 cut(s)	51, 212, 275, 340, 473, 863, 1021, 1099, 1135
NlaIV	GGNNCC	2 cut(s)	643, 961
NmuCI	GTSAC	3 cut(s)	247, 341, 463
NspI	RCATGY	2 cut(s)	340, 1099
PceI	AGGCCT	1 cut(s)	624
PciI	ACATGT	1 cut(s)	336
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	1113
PfeI	GAWTC	4 cut(s)	124, 392, 537, 851
PkrI	GCNGC	5 cut(s)	32, 40, 479, 631, 634
PleI	GAGTC	3 cut(s)	460, 913, 943
PpsI	GAGTC	3 cut(s)	460, 913, 943
PscI	ACATGT	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	653
PspN4I	GGNNCC	2 cut(s)	643, 961
PstI	CTGCAG	1 cut(s)	35
PstNI	CAGNNNCTG	2 cut(s)	599, 635
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	2 cut(s)	531, 632
RsaI	GTAC	3 cut(s)	10, 458, 1016
RsaNI	GTAC	3 cut(s)	9, 457, 1015
SaqAI	TTAA	3 cut(s)	408, 564, 1101
SatI	GCNGC	5 cut(s)	31, 39, 478, 630, 633
Sau3AI	GATC	6 cut(s)	198, 253, 268, 310, 489, 799
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	3 cut(s)	460, 913, 943
ScrFI	CCNGG	2 cut(s)	281, 646
SduI	GDGCHC	3 cut(s)	279, 590, 646
SfaNI	GCATC	2 cut(s)	366, 895
SfcI	CTRYAG	2 cut(s)	31, 618
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
Sse9I	AATT	4 cut(s)	666, 728, 1043, 1125
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	1 cut(s)	263
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	1 cut(s)	509
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	279, 644
StyI	CCWWGG	3 cut(s)	171, 194, 1131
TaaI	ACNGT	2 cut(s)	463, 595
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	404, 802
TasI	AATT	4 cut(s)	666, 728, 1043, 1125
TatI	WGTACW	3 cut(s)	8, 456, 1014
TfiI	GAWTC	4 cut(s)	124, 392, 537, 851
Tru1I	TTAA	3 cut(s)	408, 564, 1101
Tru9I	TTAA	3 cut(s)	408, 564, 1101
TscAI	CASTG	4 cut(s)	295, 320, 600, 823
TseFI	GTSAC	3 cut(s)	247, 341, 463
TseI	GCWGC	5 cut(s)	30, 38, 477, 629, 632
Tsp45I	GTSAC	3 cut(s)	247, 341, 463
TspDTI	ATGAA	5 cut(s)	123, 225, 944, 1034, 1036
TspRI	CASTG	4 cut(s)	295, 320, 600, 823
XapI	RAATTY	2 cut(s)	728, 1043
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	2 cut(s)	340, 1099
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	1 cut(s)	509
ZraI	GACGTC	1 cut(s)	154
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.