RLG00000013319

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
29836810 .. 29841178
4369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013319

Sequence Viewer

Length: 1143 bp
ATGTCCAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTGGCCTGGGAAGCTGGGAAGCCGCTGGTCATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTTTAATGCTCTATGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAAACCTCTGTTCCCTCGGATTTTAGGTCATGAAGCTGCAGGAATTGTGGAAAGCGTAGGCGAGGGTGTAACTGAACTCAAACCGGGAGACCATGTCCTCCCAGTGTTCACTGGAGAATGCAAGGAGTGTACACATTGTAAGTCAGAGGAAAGCAACTTGTGTGAACTCCTAAGGATTAATACTGACAGGGGTACTATGCTCAATGACGGCAAGACCCGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTCAATACACTGTTTCACATGTTGGTTCCGTTGTGAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGATTTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCTAAAAAGGGTTCGTCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATCTGATGTCCAACCGATTTGAGGCAGCCAAGAAGTTTGGGGTGAGTGAATTCGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATAGCTGAGATGACCAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGGAGCATCGACGCTATGATCTCTGCATTTGAATGTGTTCATGATGGTTGGGGGGTTGCTGTACTTGTTGGAGTGCCAAAGATAGACTATGAATTCAAAACCCATCCGATGAACTTCTTGAATGAGAGGACTCTGAAGGGTGCTTTCTATGGTAAGTACAAGCCCCGCACCGATCTGCCTGGTGTTGTGGAGAAGTACATGAACAAGGAGCTAGAAGTGGACAAATTTATCACTCACTCTGTTCCTCTCTCTGAGATCAACAAGGCATTTGAGTACATGCGTGTAGGAGAGGGAATCCGGTGCCTCATCTGCATGGAGCATTAG

Protein Analysis

381

Amino Acids

41.36

Weight (kDa)

7.15

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 164 5.3e-20 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 206 - 337 1.8e-24 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 3 cut(s) 91, 437, 1119
AccI GTMKAC 1 cut(s) 156
AciI CCGC 5 cut(s) 41, 65, 534, 635, 985
AclWI GGATC 2 cut(s) 118, 674
AcsI RAATTY 3 cut(s) 728, 911, 1043
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 9 cut(s) 114, 310, 373, 439, 544, 882, 977, 1016, 1094
AfiI CCNNNNNNNGG 2 cut(s) 584, 700
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 5 cut(s) 121, 663, 851, 916, 940
AjnI CCWGG 2 cut(s) 47, 997
AluBI AGCT 5 cut(s) 38, 56, 215, 776, 1030
AluI AGCT 5 cut(s) 38, 56, 215, 776, 1030
Alw21I GWGCWC 1 cut(s) 818
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 1 cut(s) 814
AlwI GGATC 2 cut(s) 118, 674
AoxI GGCC 1 cut(s) 45
ApaLI GTGCAC 1 cut(s) 814
ApeKI GCWGC 6 cut(s) 38, 215, 500, 629, 632, 704
ApoI RAATTY 3 cut(s) 728, 911, 1043
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 855
Asp718I GGTACC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 264, 397
AsuHPI GGTGA 3 cut(s) 34, 733, 781
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 818
BanI GGYRCC 3 cut(s) 91, 437, 1119
Bbv12I GWGCWC 1 cut(s) 818
BbvI GCAGC 6 cut(s) 25, 202, 512, 616, 619, 716
BccI CCATC 3 cut(s) 404, 857, 930
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 2 cut(s) 49, 999
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 2 cut(s) 264, 397
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 1031
BfmI CTRYAG 2 cut(s) 216, 498
BfoI RGCGCY 1 cut(s) 506
BisI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
BlsI GCNGC 7 cut(s) 40, 66, 217, 502, 631, 634, 706
Bme1390I CCNGG 4 cut(s) 49, 264, 397, 999
BmiI GGNNCC 4 cut(s) 93, 439, 478, 1121
BmrFI CCNGG 4 cut(s) 49, 264, 397, 999
BmrI ACTGGG 2 cut(s) 275, 828
BmsI GCATC 1 cut(s) 834
BmuI ACTGGG 2 cut(s) 275, 828
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 264, 397
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 48, 194, 405
BsaWI WCCGGW 1 cut(s) 1116
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 700
Bse1I ACTGG 3 cut(s) 281, 295, 823
Bse21I CCTNAGG 1 cut(s) 350
BseBI CCWGG 2 cut(s) 49, 999
BseDI CCNNGG 3 cut(s) 48, 194, 405
BseGI GGATG 2 cut(s) 415, 922
BseLI CCNNNNNNNGG 2 cut(s) 584, 700
BseMII CTCAG 2 cut(s) 768, 1062
BseNI ACTGG 3 cut(s) 281, 295, 823
BseSI GKGCMC 1 cut(s) 818
BseXI GCAGC 6 cut(s) 25, 202, 512, 616, 619, 716
BseYI CCCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 3 cut(s) 91, 437, 1119
BsiHKAI GWGCWC 1 cut(s) 818
BsiSI CCGG 3 cut(s) 263, 397, 1117
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 584, 700
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 818
Bsp1407I TGTACA 2 cut(s) 308, 542
Bsp143I GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BspACI CCGC 5 cut(s) 41, 65, 534, 635, 985
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 769, 1063
BspHI TCATGA 2 cut(s) 208, 859
BspLI GGNNCC 4 cut(s) 93, 439, 478, 1121
BspMAI CTGCAG 2 cut(s) 220, 502
BspPI GGATC 2 cut(s) 118, 674
BspT107I GGYRCC 3 cut(s) 91, 437, 1119
BspTNI GGTCTC 1 cut(s) 261
BsrGI TGTACA 2 cut(s) 308, 542
BsrI ACTGG 3 cut(s) 281, 295, 823
BssECI CCNNGG 3 cut(s) 48, 194, 405
BssMI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 49, 999
Bst4CI ACNGT 2 cut(s) 463, 562
BstAUI TGTACA 2 cut(s) 308, 542
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 350, 527, 777, 1071
BstF5I GGATG 2 cut(s) 415, 922
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 9 cut(s) 27, 126, 492, 669, 682, 748, 840, 994, 1077
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
BstMWI GCNNNNNNNGC 5 cut(s) 44, 53, 641, 822, 1128
BstNI CCWGG 2 cut(s) 49, 999
BstNSI RCATGY 2 cut(s) 473, 1099
BstSCI CCNGG 4 cut(s) 47, 262, 395, 997
BstSFI CTRYAG 2 cut(s) 216, 498
BstSLI GKGCMC 1 cut(s) 818
BstV1I GCAGC 6 cut(s) 25, 202, 512, 616, 619, 716
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 415, 922
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 6 cut(s) 9, 147, 288, 288, 459, 816
Cac8I GCNNGC 1 cut(s) 16
CciI TCATGA 2 cut(s) 208, 859
CfoI GCGC 1 cut(s) 505
CseI GACGC 1 cut(s) 839
Csp6I GTAC 9 cut(s) 113, 309, 372, 438, 543, 881, 976, 1015, 1093
CviAII CATG 8 cut(s) 107, 209, 272, 470, 860, 1018, 1096, 1132
CviQI GTAC 9 cut(s) 113, 309, 372, 438, 543, 881, 976, 1015, 1093
DdeI CTNAG 4 cut(s) 350, 527, 777, 1071
DpnI GATC 9 cut(s) 26, 125, 491, 668, 681, 747, 839, 993, 1076
DpnII GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 974
Eco81I CCTNAGG 1 cut(s) 350
EcoRI GAATTC 2 cut(s) 728, 911
EcoRII CCWGG 2 cut(s) 47, 997
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 8 cut(s) 110, 212, 275, 473, 863, 1021, 1099, 1135
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 189
FatI CATG 8 cut(s) 106, 208, 271, 469, 859, 1017, 1095, 1131
FauI CCCGC 1 cut(s) 992
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
FokI GGATG 2 cut(s) 422, 909
Fsp4HI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
FspBI CTAG 1 cut(s) 1031
GlaI GCGC 1 cut(s) 504
GluI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 1 cut(s) 47
HapII CCGG 3 cut(s) 263, 397, 1117
HgaI GACGC 1 cut(s) 839
HhaI GCGC 1 cut(s) 505
Hin1II CATG 8 cut(s) 110, 212, 275, 473, 863, 1021, 1099, 1135
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 3 cut(s) 736, 949, 1113
HpaII CCGG 3 cut(s) 263, 397, 1117
HphI GGTGA 3 cut(s) 34, 733, 781
Hpy166II GTNNAC 7 cut(s) 157, 288, 309, 311, 344, 816, 1039
Hpy188I TCNGA 7 cut(s) 198, 325, 608, 684, 927, 954, 1072
Hpy188III TCNNGA 6 cut(s) 209, 509, 733, 764, 860, 937
Hpy8I GTNNAC 7 cut(s) 157, 288, 309, 311, 344, 816, 1039
Hpy99I CGWCG 1 cut(s) 833
HpyAV CCTTC 2 cut(s) 632, 949
HpyCH4III ACNGT 2 cut(s) 463, 562
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 53, 641, 822, 1128
HpyF3I CTNAG 4 cut(s) 350, 527, 777, 1071
Hsp92II CATG 8 cut(s) 110, 212, 275, 473, 863, 1021, 1099, 1135
HspAI GCGC 1 cut(s) 503
KpnI GGTACC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
LmnI GCTCC 3 cut(s) 822, 1027, 1135
Lsp1109I GCAGC 6 cut(s) 25, 202, 512, 616, 619, 716
LweI GCATC 1 cut(s) 834
MaeI CTAG 1 cut(s) 1031
MaeIII GTNAC 1 cut(s) 247
MalI GATC 9 cut(s) 26, 125, 491, 668, 681, 747, 839, 993, 1076
MboI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
MboII GAAGA 2 cut(s) 133, 499
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 818
MluCI AATT 5 cut(s) 222, 420, 728, 911, 1043
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 3 cut(s) 30, 714, 868
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 2 cut(s) 132, 357
MslI CAYNNNNRTG 3 cut(s) 150, 850, 1130
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 3 cut(s) 263, 397, 1117
MspR9I CCNGG 4 cut(s) 49, 264, 397, 999
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 2 cut(s) 49, 999
MwoI GCNNNNNNNGC 5 cut(s) 44, 53, 641, 822, 1128
NciI CCSGG 2 cut(s) 264, 397
NdeII GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
NlaIII CATG 8 cut(s) 110, 212, 275, 473, 863, 1021, 1099, 1135
NlaIV GGNNCC 4 cut(s) 93, 439, 478, 1121
NspI RCATGY 2 cut(s) 473, 1099
PagI TCATGA 2 cut(s) 208, 859
PciI ACATGT 1 cut(s) 469
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 2 cut(s) 736, 1113
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 7 cut(s) 40, 66, 217, 502, 631, 634, 706
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
PscI ACATGT 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 47, 997
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 2 cut(s) 47, 997
PspN4I GGNNCC 4 cut(s) 93, 439, 478, 1121
PstI CTGCAG 2 cut(s) 220, 502
PsuI RGATCY 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 9 cut(s) 114, 310, 373, 439, 544, 882, 977, 1016, 1094
RsaNI GTAC 9 cut(s) 113, 309, 372, 438, 543, 881, 976, 1015, 1093
RseI CAYNNNNRTG 3 cut(s) 150, 850, 1130
SaqAI TTAA 2 cut(s) 132, 357
SatI GCNGC 7 cut(s) 39, 65, 216, 501, 630, 633, 705
Sau3AI GATC 9 cut(s) 24, 123, 489, 666, 679, 745, 837, 991, 1074
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 4 cut(s) 49, 264, 397, 999
SduI GDGCHC 1 cut(s) 818
SfaNI GCATC 1 cut(s) 834
SfcI CTRYAG 2 cut(s) 216, 498
SmiMI CAYNNNNRTG 3 cut(s) 150, 850, 1130
Sse9I AATT 5 cut(s) 222, 420, 728, 911, 1043
SsiI CCGC 5 cut(s) 41, 65, 534, 635, 985
SspMI CTAG 1 cut(s) 1031
StyD4I CCNGG 4 cut(s) 47, 262, 395, 997
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 463, 562
TaqI TCGA 1 cut(s) 828
TasI AATT 5 cut(s) 222, 420, 728, 911, 1043
TatI WGTACW 6 cut(s) 308, 542, 880, 975, 1014, 1092
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 736, 1113
Tru1I TTAA 2 cut(s) 132, 357
Tru9I TTAA 2 cut(s) 132, 357
TscAI CASTG 6 cut(s) 16, 154, 288, 295, 466, 823
TseI GCWGC 6 cut(s) 38, 215, 500, 629, 632, 704
TspDTI ATGAA 6 cut(s) 123, 225, 848, 924, 944, 1034
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 6 cut(s) 16, 154, 288, 295, 466, 823
Tth111I GACNNNGTC 1 cut(s) 272
VneI GTGCAC 1 cut(s) 814
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 728, 911, 1043
XceI RCATGY 2 cut(s) 473, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.