Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

14567050 .. 14569696

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATCATGAGGTACCTGGCTCAGTGGGAACCAGTGCCAGCTTCTCTTTGAGATTGGGTCAGGCTATTTTTTCCTCTGCTTCACTTCTCTTCATGTCTTTGGGGGTTGAGTTCTACAGCTACACTGCTTTCTGCTACCTGGTCACAGTCATGGGTCTGGTTATACCATGGAGTTTCACATTGGCAATGGTTGATGGTTACTCTGTTCTTGTTAAATGTCCCCTTCGTCAGCCTGGAATACTGCTGATCATTGTTGTAGGAGATTGGATCCTATCAATTCTTACTCTGGGTGCAGCATGCTCAACAGCTAGTGTTGTGGACGTCCTGCTCCACGCAGGTGGTCCATATTGCCCTCCAAAGTTTTGCAGCAGGTACAAGATATCTGCTGCAATGGCTTTCATGACATGGTTTCTCTCGTTGGCTTCATCTCTTTTCAATCTCTGGTTACTTCCCTCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00592 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

153

Amino Acids

16.52

Weight (kDa)

6.68

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	9 - 138	3e-26	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
AatII	GACGTC	1 cut(s)	324
Acc36I	ACCTGC	2 cut(s)	326, 360
Acc65I	GGTACC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	13
AclWI	GGATC	3 cut(s)	12, 262, 275
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	2 cut(s)	15, 374
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	3 cut(s)	16, 138, 232
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	3 cut(s)	42, 120, 308
AluI	AGCT	3 cut(s)	42, 120, 308
AlwI	GGATC	3 cut(s)	12, 262, 275
ApeKI	GCWGC	3 cut(s)	293, 366, 386
Asp718I	GGTACC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	305, 373, 378
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	3 cut(s)	18, 140, 234
BclI	TGATCA	1 cut(s)	246
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	115
BfuAI	ACCTGC	2 cut(s)	326, 360
BisI	GCNGC	3 cut(s)	294, 367, 387
BlsI	GCNGC	3 cut(s)	295, 368, 388
Bme1390I	CCNGG	3 cut(s)	18, 140, 234
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	3 cut(s)	15, 31, 269
BmrFI	CCNGG	3 cut(s)	18, 140, 234
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	2 cut(s)	192, 396
BseBI	CCWGG	3 cut(s)	18, 140, 234
BseDI	CCNNGG	1 cut(s)	167
BseMI	GCAATG	2 cut(s)	192, 396
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	305, 373, 378
BsgI	GTGCAG	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	4, 246, 267
Bsp19I	CCATGG	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	35
BspHI	TCATGA	2 cut(s)	7, 399
BspLI	GGNNCC	3 cut(s)	15, 31, 269
BspMI	ACCTGC	2 cut(s)	326, 360
BspPI	GGATC	3 cut(s)	12, 262, 275
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	2 cut(s)	192, 396
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	3 cut(s)	4, 246, 267
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	3 cut(s)	18, 140, 234
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	40, 298
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	167
BstKTI	GATC	3 cut(s)	7, 249, 270
BstMBI	GATC	3 cut(s)	4, 246, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	3 cut(s)	18, 140, 234
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	3 cut(s)	16, 138, 232
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	305, 373, 378
BstX2I	RGATCY	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	30, 40, 123
BveI	ACCTGC	2 cut(s)	326, 360
Cac8I	GCNNGC	2 cut(s)	40, 298
CciI	TCATGA	2 cut(s)	7, 399
Cfr13I	GGNCC	1 cut(s)	341
CsiI	ACCWGGT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	14, 373
CviAII	CATG	7 cut(s)	8, 94, 151, 168, 297, 400, 405
CviJI	RGCY	8 cut(s)	21, 42, 65, 120, 232, 308, 395, 422
CviKI_1	RGCY	8 cut(s)	21, 42, 65, 120, 232, 308, 395, 422
CviQI	GTAC	2 cut(s)	14, 373
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	3 cut(s)	6, 248, 269
DpnII	GATC	3 cut(s)	4, 246, 267
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	16, 138, 232
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	7 cut(s)	11, 97, 154, 171, 300, 403, 408
FaiI	YATR	9 cut(s)	9, 95, 152, 164, 169, 298, 346, 401, 406
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	7 cut(s)	7, 93, 150, 167, 296, 399, 404
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	294, 367, 387
Fsp4HI	GCNGC	3 cut(s)	294, 367, 387
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	3 cut(s)	294, 367, 387
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	7 cut(s)	11, 97, 154, 171, 300, 403, 408
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188III	TCNNGA	2 cut(s)	8, 400
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	293, 366, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	7 cut(s)	11, 97, 154, 171, 300, 403, 408
KpnI	GGTACC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	4, 246, 267
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	3 cut(s)	305, 373, 378
MabI	ACCWGGT	1 cut(s)	138
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	142, 197, 444
MalI	GATC	3 cut(s)	6, 248, 269
MboI	GATC	3 cut(s)	4, 246, 267
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	1 cut(s)	276
MnlI	CCTC	3 cut(s)	4, 85, 363
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	149, 336
MspR9I	CCNGG	3 cut(s)	18, 140, 234
MvaI	CCWGG	3 cut(s)	18, 140, 234
MwoI	GCNNNNNNNGC	1 cut(s)	392
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	3 cut(s)	4, 246, 267
NlaIII	CATG	7 cut(s)	11, 97, 154, 171, 300, 403, 408
NlaIV	GGNNCC	3 cut(s)	15, 31, 269
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	300
OliI	CACNNNNGTG	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	300
PagI	TCATGA	2 cut(s)	7, 399
PaqCI	CACCTGC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	295, 368, 388
Psp6I	CCWGG	3 cut(s)	16, 138, 232
PspGI	CCWGG	3 cut(s)	16, 138, 232
PspN4I	GGNNCC	3 cut(s)	15, 31, 269
PspPI	GGNCC	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	2 cut(s)	15, 374
RsaNI	GTAC	2 cut(s)	14, 373
RseI	CAYNNNNRTG	2 cut(s)	149, 336
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	294, 367, 387
Sau3AI	GATC	3 cut(s)	4, 246, 267
Sau96I	GGNCC	1 cut(s)	341
ScrFI	CCNGG	3 cut(s)	18, 140, 234
SetI	ASST	9 cut(s)	15, 19, 44, 122, 141, 310, 324, 340, 374
SexAI	ACCWGGT	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	149, 336
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	1 cut(s)	276
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	16, 138, 232
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	324
TasI	AATT	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	30, 40, 130
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	293, 366, 386
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	82, 388, 414
TspRI	CASTG	3 cut(s)	30, 40, 130
VpaK11BI	GGWCC	1 cut(s)	341
XceI	RCATGY	1 cut(s)	300
XspI	CTAG	1 cut(s)	309
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.