RLG00000013313

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
29631712 .. 29635107
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013313

Sequence Viewer

Length: 1377 bp
ATGGAATTATTAAGCACAGCATGGAATTCCAGAGCCTCTGCTATTTCATTTGCACCACTCATCACTCCCAATAGTTGCAATACCTCTCACTTCCAACACCCTTCTTTCCCACCTCAAAGGCTTTCTTTCCCATTTTGCCCGTACCCATTTCGCTTTGTTCCCAACAAGTCCCTAACACTGCAGGCTCGCAAGCAAAACTCAGAGCCTGAGCCGCAGCCACTTGTCAGCCCAACCATGTCCAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTCGCCTGGGAAGCTGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTATACCGCTCTGTGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAATCCACTGTTCCCTCGGATTTTCGGTCATGAAGCTGGAGGAATAGTGGAAAGCGTAGGTGAGGGTGTAACTGAACTCCAACCGGGAGACCATGTCCTCCCGGTGTTCACCGGAGAATGCAAGGAGTGCGCACATTGTAAGTCAGAGGAAAGCAACTTGTGTGATCTCCTAAGGATTAATACTGACAGGGGTACTATGCTCAATGACGGCCAGACCAGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTTCACATGTTGGTTCCGTTGCGAAGATCAACCCTGCAGCACCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATTTGTACAGGTTTTGGTGCAACTGTAAACGTTGCAAAGCCGAAAAAGGGTTCATCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATAATTGGAGTTGATCTGAATTCCAACCGATTTGAGGAAGCCAAGAAGTTTGGGGTGAATGAATTTGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATAGCTGAGATGACCAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGATCTCTGCCTTTGAATGTGTTCATGATGGTTGGGGGGTTGCTGTACTTGTTGGAGTGCCAAACAAAGACGATGCATTCAAAACCCATCCGATAAACTTCTTGAATGAGAGGACTCTGAAGGGTACTTTCTATGGTAACTACAAGCCCCGCACTGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGATGGAATTGGACAAATTTATCACTCACTCTGTTTCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGCTGGCAGGAGAGGGAATCCGGTGCATCATTCGCATGGAGCATTAG

Protein Analysis

459

Amino Acids

50.04

Weight (kDa)

6.71

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 113 - 242 1.4e-19 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 284 - 415 7.8e-27 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 544
Acc65I GGTACC 1 cut(s) 671
AccB1I GGYRCC 2 cut(s) 325, 671
AccBSI CCGCTC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 390
AciI CCGC 7 cut(s) 212, 275, 299, 369, 768, 869, 1219
AclI AACGTT 1 cut(s) 801
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 5 cut(s) 25, 771, 919, 962, 1277
AcuI CTGAAG 1 cut(s) 1208
AfaI GTAC 9 cut(s) 143, 348, 607, 673, 778, 1116, 1195, 1250, 1328
AfiI CCNNNNNNNGG 2 cut(s) 818, 934
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 5 cut(s) 355, 897, 1085, 1150, 1174
AjnI CCWGG 4 cut(s) 281, 629, 1062, 1231
AluBI AGCT 4 cut(s) 272, 290, 449, 1010
AluI AGCT 4 cut(s) 272, 290, 449, 1010
Alw21I GWGCWC 1 cut(s) 1052
Alw26I GTCTC 1 cut(s) 495
Alw44I GTGCAC 1 cut(s) 1048
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 622
ApaLI GTGCAC 1 cut(s) 1048
ApeKI GCWGC 5 cut(s) 214, 272, 734, 863, 866
ApoI RAATTY 5 cut(s) 25, 771, 919, 962, 1277
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 1089
Asp718I GGTACC 1 cut(s) 671
AspLEI GCGC 1 cut(s) 545
AsuC2I CCSGG 2 cut(s) 498, 515
AsuHPI GGTGA 5 cut(s) 268, 485, 514, 967, 1015
AxyI CCTNAGG 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 1052
BanI GGYRCC 2 cut(s) 325, 671
Bbv12I GWGCWC 1 cut(s) 1052
BbvI GCAGC 5 cut(s) 226, 259, 746, 850, 853
BccI CCATC 4 cut(s) 638, 1091, 1164, 1258
BceAI ACGGC 1 cut(s) 637
BciT130I CCWGG 4 cut(s) 283, 631, 1064, 1233
BclI TGATCA 1 cut(s) 258
BcnI CCSGG 2 cut(s) 498, 515
BcoDI GTCTC 1 cut(s) 495
BfmI CTRYAG 2 cut(s) 179, 732
BisI GCNGC 7 cut(s) 212, 215, 273, 299, 735, 864, 867
BlsI GCNGC 7 cut(s) 213, 216, 274, 300, 736, 865, 868
Bme1390I CCNGG 6 cut(s) 283, 498, 515, 631, 1064, 1233
BmiI GGNNCC 3 cut(s) 327, 673, 712
BmrFI CCNGG 6 cut(s) 283, 498, 515, 631, 1064, 1233
BmsI GCATC 3 cut(s) 1068, 1132, 1365
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 207
BpuMI CCSGG 2 cut(s) 498, 515
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 282, 428, 639
BsaWI WCCGGW 2 cut(s) 524, 1350
BsaXI ACNNNNNCTCC 4 cut(s) 444, 474, 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 818, 934
Bse1I ACTGG 1 cut(s) 1057
Bse21I CCTNAGG 1 cut(s) 584
BseBI CCWGG 4 cut(s) 283, 631, 1064, 1233
BseDI CCNNGG 3 cut(s) 282, 428, 639
BseGI GGATG 3 cut(s) 649, 1059, 1156
BseLI CCNNNNNNNGG 2 cut(s) 818, 934
BseMII CTCAG 4 cut(s) 198, 213, 1002, 1296
BseNI ACTGG 1 cut(s) 1057
BseSI GKGCMC 1 cut(s) 1052
BseXI GCAGC 5 cut(s) 226, 259, 746, 850, 853
BseYI CCCAGC 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 624
BshNI GGYRCC 2 cut(s) 325, 671
BsiEI CGRYCG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 1052
BsiSI CCGG 4 cut(s) 497, 515, 525, 1351
BslFI GGGAC 2 cut(s) 154, 423
BslI CCNNNNNNNGG 2 cut(s) 818, 934
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 2 cut(s) 154, 423
BsmI GAATGC 2 cut(s) 536, 1145
BsnI GGCC 1 cut(s) 624
Bso31I GGTCTC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 1052
Bsp1407I TGTACA 1 cut(s) 776
Bsp143I GATC 9 cut(s) 258, 357, 577, 723, 913, 979, 1071, 1225, 1308
BspACI CCGC 7 cut(s) 212, 275, 299, 369, 768, 869, 1219
BspANI GGCC 1 cut(s) 624
BspCNI CTCAG 4 cut(s) 199, 212, 1003, 1297
BspHI TCATGA 2 cut(s) 442, 1093
BspLI GGNNCC 3 cut(s) 327, 673, 712
BspMAI CTGCAG 2 cut(s) 183, 736
BspPI GGATC 1 cut(s) 352
BspT107I GGYRCC 2 cut(s) 325, 671
BspTNI GGTCTC 1 cut(s) 495
BsrBI CCGCTC 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 776
BsrI ACTGG 1 cut(s) 1057
BssECI CCNNGG 3 cut(s) 282, 428, 639
BssMI GATC 9 cut(s) 258, 357, 577, 723, 913, 979, 1071, 1225, 1308
BssNAI GTATAC 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 639
Bst1107I GTATAC 1 cut(s) 391
Bst2UI CCWGG 4 cut(s) 283, 631, 1064, 1233
Bst4CI ACNGT 3 cut(s) 423, 697, 796
BstAPI GCANNNNNTGC 1 cut(s) 540
BstAUI TGTACA 1 cut(s) 776
BstC8I GCNNGC 5 cut(s) 183, 187, 191, 250, 1335
BstDEI CTNAG 6 cut(s) 199, 207, 584, 761, 1011, 1305
BstF5I GGATG 3 cut(s) 649, 1059, 1156
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 9 cut(s) 261, 360, 580, 726, 916, 982, 1074, 1228, 1311
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 9 cut(s) 258, 357, 577, 723, 913, 979, 1071, 1225, 1308
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 7 cut(s) 211, 278, 287, 540, 875, 1056, 1362
BstNI CCWGG 4 cut(s) 283, 631, 1064, 1233
BstNSI RCATGY 2 cut(s) 707, 1333
BstSCI CCNGG 6 cut(s) 281, 496, 513, 629, 1062, 1231
BstSFI CTRYAG 2 cut(s) 179, 732
BstSLI GKGCMC 1 cut(s) 1052
BstV1I GCAGC 5 cut(s) 226, 259, 746, 850, 853
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
BstZ17I GTATAC 1 cut(s) 391
Bsu36I CCTNAGG 1 cut(s) 584
BsuRI GGCC 1 cut(s) 624
BtsCI GGATG 3 cut(s) 649, 1059, 1156
BtsI GCAGTG 2 cut(s) 176, 243
BtsIMutI CAGTG 8 cut(s) 176, 243, 381, 419, 691, 693, 1050, 1221
Cac8I GCNNGC 5 cut(s) 183, 187, 191, 250, 1335
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 2 cut(s) 442, 1093
CfoI GCGC 1 cut(s) 545
CsiI ACCWGGT 2 cut(s) 629, 1231
Csp6I GTAC 9 cut(s) 142, 347, 606, 672, 777, 1115, 1194, 1249, 1327
CviQI GTAC 9 cut(s) 142, 347, 606, 672, 777, 1115, 1194, 1249, 1327
DdeI CTNAG 6 cut(s) 199, 207, 584, 761, 1011, 1305
DpnI GATC 9 cut(s) 260, 359, 579, 725, 915, 981, 1073, 1227, 1310
DpnII GATC 9 cut(s) 258, 357, 577, 723, 913, 979, 1071, 1225, 1308
EaeI YGGCCR 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 1208
Eco81I CCTNAGG 1 cut(s) 584
EcoRI GAATTC 2 cut(s) 25, 919
EcoRII CCWGG 4 cut(s) 281, 629, 1062, 1231
EcoT14I CCWWGG 1 cut(s) 639
EcoT22I ATGCAT 1 cut(s) 1147
ErhI CCWWGG 1 cut(s) 639
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FaqI GGGAC 2 cut(s) 154, 423
FauI CCCGC 1 cut(s) 1226
FbaI TGATCA 1 cut(s) 258
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 7 cut(s) 212, 215, 273, 299, 735, 864, 867
FokI GGATG 3 cut(s) 656, 1046, 1143
Fsp4HI GCNGC 7 cut(s) 212, 215, 273, 299, 735, 864, 867
FspAI RTGCGCAY 1 cut(s) 544
FspI TGCGCA 1 cut(s) 544
GlaI GCGC 1 cut(s) 544
GluI GCNGC 7 cut(s) 212, 215, 273, 299, 735, 864, 867
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 1 cut(s) 624
HapII CCGG 4 cut(s) 497, 515, 525, 1351
HhaI GCGC 1 cut(s) 545
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 3 cut(s) 970, 1183, 1347
HpaII CCGG 4 cut(s) 497, 515, 525, 1351
HphI GGTGA 5 cut(s) 268, 485, 514, 967, 1015
Hpy166II GTNNAC 4 cut(s) 391, 522, 799, 1050
Hpy188I TCNGA 8 cut(s) 202, 432, 559, 842, 918, 1161, 1188, 1306
Hpy188III TCNNGA 6 cut(s) 30, 443, 743, 998, 1094, 1171
Hpy8I GTNNAC 4 cut(s) 391, 522, 799, 1050
HpyAV CCTTC 3 cut(s) 111, 866, 1183
HpyCH4III ACNGT 3 cut(s) 423, 697, 796
HpyCH4IV ACGT 1 cut(s) 801
HpyF10VI GCNNNNNNNGC 7 cut(s) 211, 278, 287, 540, 875, 1056, 1362
HpyF3I CTNAG 6 cut(s) 199, 207, 584, 761, 1011, 1305
HpySE526I ACGT 1 cut(s) 801
HspAI GCGC 1 cut(s) 543
KpnI GGTACC 1 cut(s) 675
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 9 cut(s) 258, 357, 577, 723, 913, 979, 1071, 1225, 1308
LmnI GCTCC 1 cut(s) 1369
Lsp1109I GCAGC 5 cut(s) 226, 259, 746, 850, 853
LweI GCATC 3 cut(s) 1068, 1132, 1365
MabI ACCWGGT 2 cut(s) 629, 1231
MaeII ACGT 1 cut(s) 801
MaeIII GTNAC 2 cut(s) 481, 1205
MalI GATC 9 cut(s) 260, 359, 579, 725, 915, 981, 1073, 1227, 1310
MbiI CCGCTC 1 cut(s) 371
MboI GATC 9 cut(s) 258, 357, 577, 723, 913, 979, 1071, 1225, 1308
MboII GAAGA 2 cut(s) 367, 733
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 1052
MluCI AATT 9 cut(s) 5, 25, 654, 771, 903, 919, 962, 1268, 1277
MlyI GAGTC 1 cut(s) 1177
MmeI TCCRAC 5 cut(s) 118, 264, 517, 948, 1102
Mph1103I ATGCAT 1 cut(s) 1147
MroXI GAANNNNTTC 1 cut(s) 1089
MseI TTAA 2 cut(s) 11, 591
MslI CAYNNNNRTG 2 cut(s) 384, 1364
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 4 cut(s) 497, 515, 525, 1351
MspR9I CCNGG 6 cut(s) 283, 498, 515, 631, 1064, 1233
Mva1269I GAATGC 2 cut(s) 536, 1145
MvaI CCWGG 4 cut(s) 283, 631, 1064, 1233
MwoI GCNNNNNNNGC 7 cut(s) 211, 278, 287, 540, 875, 1056, 1362
NciI CCSGG 2 cut(s) 498, 515
NdeII GATC 9 cut(s) 258, 357, 577, 723, 913, 979, 1071, 1225, 1308
NlaIV GGNNCC 3 cut(s) 327, 673, 712
NsbI TGCGCA 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 1147
NspI RCATGY 2 cut(s) 707, 1333
PagI TCATGA 2 cut(s) 442, 1093
PciI ACATGT 1 cut(s) 703
PctI GAATGC 2 cut(s) 536, 1145
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 2 cut(s) 970, 1347
PflFI GACNNNGTC 1 cut(s) 506
PkrI GCNGC 7 cut(s) 213, 216, 274, 300, 736, 865, 868
PleI GAGTC 1 cut(s) 1177
PpsI GAGTC 1 cut(s) 1177
PscI ACATGT 1 cut(s) 703
PshBI ATTAAT 1 cut(s) 591
Psp1406I AACGTT 1 cut(s) 801
Psp6I CCWGG 4 cut(s) 281, 629, 1062, 1231
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 4 cut(s) 281, 629, 1062, 1231
PspN4I GGNNCC 3 cut(s) 327, 673, 712
PstI CTGCAG 2 cut(s) 183, 736
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 357
PsyI GACNNNGTC 1 cut(s) 506
RsaI GTAC 9 cut(s) 143, 348, 607, 673, 778, 1116, 1195, 1250, 1328
RsaNI GTAC 9 cut(s) 142, 347, 606, 672, 777, 1115, 1194, 1249, 1327
RseI CAYNNNNRTG 2 cut(s) 384, 1364
SaqAI TTAA 2 cut(s) 11, 591
SatI GCNGC 7 cut(s) 212, 215, 273, 299, 735, 864, 867
Sau3AI GATC 9 cut(s) 258, 357, 577, 723, 913, 979, 1071, 1225, 1308
SchI GAGTC 1 cut(s) 1177
ScrFI CCNGG 6 cut(s) 283, 498, 515, 631, 1064, 1233
SduI GDGCHC 1 cut(s) 1052
SexAI ACCWGGT 2 cut(s) 629, 1231
SfaNI GCATC 3 cut(s) 1068, 1132, 1365
SfcI CTRYAG 2 cut(s) 179, 732
SmiMI CAYNNNNRTG 2 cut(s) 384, 1364
Sse9I AATT 9 cut(s) 5, 25, 654, 771, 903, 919, 962, 1268, 1277
SsiI CCGC 7 cut(s) 212, 275, 299, 369, 768, 869, 1219
StyD4I CCNGG 6 cut(s) 281, 496, 513, 629, 1062, 1231
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 3 cut(s) 423, 697, 796
TaiI ACGT 1 cut(s) 804
TaqII GACCGA 1 cut(s) 428
TasI AATT 9 cut(s) 5, 25, 654, 771, 903, 919, 962, 1268, 1277
TatI WGTACW 4 cut(s) 776, 1114, 1248, 1326
TauI GCSGC 2 cut(s) 214, 301
TfiI GAWTC 2 cut(s) 970, 1347
Tru1I TTAA 2 cut(s) 11, 591
Tru9I TTAA 2 cut(s) 11, 591
TscAI CASTG 8 cut(s) 183, 250, 388, 426, 691, 700, 1057, 1228
TseI GCWGC 5 cut(s) 214, 272, 734, 863, 866
TspDTI ATGAA 7 cut(s) 36, 357, 459, 813, 975, 1082, 1268
TspGWI ACGGA 1 cut(s) 703
TspRI CASTG 8 cut(s) 183, 250, 388, 426, 691, 700, 1057, 1228
Tth111I GACNNNGTC 1 cut(s) 506
VneI GTGCAC 1 cut(s) 1048
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 5 cut(s) 25, 771, 919, 962, 1277
XceI RCATGY 2 cut(s) 707, 1333
XcmI CCANNNNNNNNNTGG 1 cut(s) 841
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 1089
Zsp2I ATGCAT 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.