Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

5409815 .. 5412186

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1068100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGAACCGCGGTGGCATGGGAAGCGGGGAAGCCACTGTCAATTGAGGAAGTGGAGGTGGCCCCACCGCAGAAACATGAAGTTCGCTTGAAGGTCCTCTTCACCTCTCTTTGCCACACCGATGTCTACTTCTGGGAAGCCAAAGGACAACAACCGCTGTTTCCTCGCATTTTTTGTCATGAAGCTGGAGGAGTTGTGGAAAGCGTAGGCGAGGGCGTAACTGAACTCCAGCCGGGTGACCACGTCCTCCCTGTGTTCACTAGAGAGTGCAAGGAGTGCGCGCAATGTAAGTCGAAGGAAAGCAACATGTGTGATCTGCTGAGGATCAATACTGATAGGGGTACCATGATCAATGATGGCCAGTCCAGGTTCTCCAAGGATGGAAAACCAATTTATCACTGTTTAGGTACTTCTACCTTCAGTGAATACACTGTTTGTCATGTTCGTTCCGTTGCTAAGATCAACCCGGCTGCTCCCCTTGACAAAGTTTGTGTTCGTAGTTGCGGAATATGCACAGGTTTTGGCGCCACTGTGAATGTTGCAAAACCGAAAAAGGGTTCATCTATTGCCATCTTTGGATTGGGAGCTGTTAGTCTTGCTGCTGCTGAAGGTGCAAGGGTTTCGGGCTGTTCAAGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

214

Amino Acids

22.98

Weight (kDa)

8.24

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	25 - 154	9.7e-20	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	341, 524
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	2 cut(s)	11, 281
AciI	CCGC	6 cut(s)	9, 11, 26, 68, 155, 504
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	358
AcuI	CTGAAG	2 cut(s)	403, 627
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	343, 409
AfiI	CCNNNNNNNGG	1 cut(s)	554
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	91, 633
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	2 cut(s)	185, 587
AluI	AGCT	2 cut(s)	185, 587
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	60, 358
ApeKI	GCWGC	3 cut(s)	470, 599, 602
Asp718I	GGTACC	1 cut(s)	341
AspLEI	GCGC	3 cut(s)	281, 283, 527
AspS9I	GGNCC	2 cut(s)	61, 94
AsuC2I	CCSGG	2 cut(s)	234, 467
AsuHPI	GGTGA	2 cut(s)	94, 248
AvaII	GGWCC	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	360
BanI	GGYRCC	2 cut(s)	341, 524
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	3 cut(s)	457, 586, 589
BccI	CCATC	3 cut(s)	350, 374, 578
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	234, 467
BfaI	CTAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	528
BisI	GCNGC	3 cut(s)	471, 600, 603
BlsI	GCNGC	3 cut(s)	472, 601, 604
Bme1390I	CCNGG	3 cut(s)	234, 367, 467
Bme18I	GGWCC	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	61, 94
BmiI	GGNNCC	3 cut(s)	63, 343, 526
BmrFI	CCNGG	3 cut(s)	234, 367, 467
BpmI	CTGGAG	2 cut(s)	207, 212
Bpu10I	CCTNAGC	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	234, 467
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	9, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	9, 375
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	361
BsePI	GCGCGC	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	3 cut(s)	457, 586, 589
Bsh1236I	CGCG	2 cut(s)	11, 281
BshFI	GGCC	2 cut(s)	62, 360
BshNI	GGYRCC	2 cut(s)	341, 524
BsiSI	CCGG	2 cut(s)	233, 467
BslI	CCNNNNNNNGG	1 cut(s)	554
BsnI	GGCC	2 cut(s)	62, 360
Bsp143I	GATC	4 cut(s)	313, 324, 348, 459
BspACI	CCGC	6 cut(s)	9, 11, 26, 68, 155, 504
BspANI	GGCC	2 cut(s)	62, 360
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	2 cut(s)	11, 281
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	63, 343, 526
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	2 cut(s)	341, 524
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	9, 375
BssHII	GCGCGC	1 cut(s)	279
BssMI	GATC	4 cut(s)	313, 324, 348, 459
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	4 cut(s)	39, 401, 433, 532
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	320, 456
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	2 cut(s)	11, 281
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	3 cut(s)	281, 283, 527
BstKTI	GATC	4 cut(s)	316, 327, 351, 462
BstMBI	GATC	4 cut(s)	313, 324, 348, 459
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 276, 510, 611
BstNI	CCWGG	1 cut(s)	367
BstNSI	RCATGY	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	236
BstSCI	CCNGG	3 cut(s)	232, 365, 465
BstUI	CGCG	2 cut(s)	11, 281
BstV1I	GCAGC	3 cut(s)	457, 586, 589
BsuRI	GGCC	2 cut(s)	62, 360
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	5 cut(s)	35, 397, 427, 429, 528
Cac8I	GCNNGC	1 cut(s)	281
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	3 cut(s)	281, 283, 527
Cfr13I	GGNCC	2 cut(s)	61, 94
Cfr42I	CCGCGG	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	342, 408
CviAII	CATG	6 cut(s)	18, 77, 179, 307, 346, 440
CviJI	RGCY	9 cut(s)	34, 62, 140, 185, 232, 360, 470, 587, 627
CviKI_1	RGCY	9 cut(s)	34, 62, 140, 185, 232, 360, 470, 587, 627
CviQI	GTAC	2 cut(s)	342, 408
DdeI	CTNAG	2 cut(s)	320, 456
DinI	GGCGCC	1 cut(s)	526
DpnI	GATC	4 cut(s)	315, 326, 350, 461
DpnII	GATC	4 cut(s)	313, 324, 348, 459
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	403, 627
Eco91I	GGTNACC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	375
EgeI	GGCGCC	1 cut(s)	526
EheI	GGCGCC	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	6 cut(s)	21, 80, 182, 310, 349, 443
FaiI	YATR	8 cut(s)	19, 78, 180, 308, 347, 441, 511, 640
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	6 cut(s)	17, 76, 178, 306, 345, 439
FauI	CCCGC	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	471, 600, 603
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	471, 600, 603
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	3 cut(s)	280, 282, 526
GluI	GCNGC	3 cut(s)	471, 600, 603
GsuI	CTGGAG	2 cut(s)	207, 212
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	62, 360
HapII	CCGG	2 cut(s)	233, 467
HhaI	GCGC	3 cut(s)	281, 283, 527
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	6 cut(s)	21, 80, 182, 310, 349, 443
Hin6I	GCGC	3 cut(s)	279, 281, 525
HinP1I	GCGC	3 cut(s)	279, 281, 525
HpaII	CCGG	2 cut(s)	233, 467
HphI	GGTGA	2 cut(s)	94, 248
Hpy166II	GTNNAC	2 cut(s)	127, 258
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	127, 258
HpyAV	CCTTC	4 cut(s)	85, 289, 427, 602
HpyCH4III	ACNGT	4 cut(s)	39, 401, 433, 532
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	270, 513, 542, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 276, 510, 611
HpyF3I	CTNAG	2 cut(s)	320, 456
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	6 cut(s)	21, 80, 182, 310, 349, 443
HspAI	GCGC	3 cut(s)	279, 281, 525
KasI	GGCGCC	1 cut(s)	524
KpnI	GGTACC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	348
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	313, 324, 348, 459
LmnI	GCTCC	2 cut(s)	478, 584
Lsp1109I	GCAGC	3 cut(s)	457, 586, 589
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	217, 236
MalI	GATC	4 cut(s)	315, 326, 350, 461
MboI	GATC	4 cut(s)	313, 324, 348, 459
MboII	GAAGA	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	2 cut(s)	42, 390
MluNI	TGGCCA	1 cut(s)	360
Mly113I	GGCGCC	1 cut(s)	525
MnlI	CCTC	9 cut(s)	40, 49, 107, 115, 174, 182, 205, 257, 315
Mox20I	TGGCCA	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	2 cut(s)	11, 157
MspI	CCGG	2 cut(s)	233, 467
MspR9I	CCNGG	3 cut(s)	234, 367, 467
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	2 cut(s)	11, 281
MwoI	GCNNNNNNNGC	4 cut(s)	23, 276, 510, 611
NarI	GGCGCC	1 cut(s)	525
NciI	CCSGG	2 cut(s)	234, 467
NdeII	GATC	4 cut(s)	313, 324, 348, 459
NlaIII	CATG	6 cut(s)	21, 80, 182, 310, 349, 443
NlaIV	GGNNCC	3 cut(s)	63, 343, 526
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	310
PagI	TCATGA	1 cut(s)	178
PauI	GCGCGC	1 cut(s)	279
PciI	ACATGT	1 cut(s)	306
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	472, 601, 604
PluTI	GGCGCC	1 cut(s)	528
PpuMI	RGGWCCY	1 cut(s)	94
PscI	ACATGT	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	365
PspEI	GGTNACC	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	63, 343, 526
PspPI	GGNCC	2 cut(s)	61, 94
PspPPI	RGGWCCY	1 cut(s)	94
PsyI	GACNNNGTC	1 cut(s)	242
PteI	GCGCGC	1 cut(s)	279
RsaI	GTAC	2 cut(s)	343, 409
RsaNI	GTAC	2 cut(s)	342, 408
RseI	CAYNNNNRTG	1 cut(s)	120
SacII	CCGCGG	1 cut(s)	12
SatI	GCNGC	3 cut(s)	471, 600, 603
Sau3AI	GATC	4 cut(s)	313, 324, 348, 459
Sau96I	GGNCC	2 cut(s)	61, 94
ScrFI	CCNGG	3 cut(s)	234, 367, 467
SfoI	GGCGCC	1 cut(s)	526
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	42, 390
SsiI	CCGC	6 cut(s)	9, 11, 26, 68, 155, 504
SspDI	GGCGCC	1 cut(s)	524
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	232, 365, 465
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	4 cut(s)	39, 401, 433, 532
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	293
TasI	AATT	2 cut(s)	42, 390
TscAI	CASTG	5 cut(s)	42, 404, 427, 436, 535
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	3 cut(s)	470, 599, 602
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	93, 195, 549
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	5 cut(s)	42, 404, 427, 436, 535
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	94
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.