Rroxscaffold_7G00191460

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
32042304 .. 32046440
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191460.1

Sequence Viewer

Length: 1428 bp
ATGTTGGTGGGAATCGTGAGGATCACTCTGTCTTTTGGTTTAAGATTTGTACCAGTTTGGGCTAAGCAGCTTCTTGCTGCGGTGGCCTGGGAAGCTGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTTTACCGCTCTGTGCCACACTGATGTATACTTCTGGGAAGCCAAGGGACAAAATCCACTAATCGTGGAAAGCGTAGGCGAGGGTGTAACTGAACTCAAACCGGGAGACCATGTCCTGCCGGTGTTCACTGGAGAATGCAAGGAGTGCGCACATTGTAAGTCAGAGGAAAGCAACATGTGTGATCTCCTAAGGATTAATACCGACAGGGGTACTATGCTCAATGATGGCAAGAGCAGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTTCACATGTTGGCTCCGTTGCGAAGATCAACCCTGCAGCACCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCGAAAAAGGGTTCATCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCACGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATTTGAACTCTAACCGATTTGAGGAAGCTAAGAAGTTTGGGGTGAATGAATTTGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATTGCTGAGATGACCAATGGTGGAGTTGATCGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGATATCTGCCTTTGAATGTGTTCATGATGGTTGGGGAGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATACGTTCAAAACCCATCCGGTGAACTTCTTGAATGAGAGGACTCTGAAGGGTACTTTCTATGGTAACTACAAGCCCCGCACCGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGCTGGAAGTGGACAAGTTTATCACTCACTCTGTTCCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGCGGGCAGGACAGGGAATCCGATCACTACTCTTGGGCCTCTCTTTTGTTGTCCGCTTTGAGAATAGTTTTCATGGAATCTTTTTTGCAATTTTTGGTTTTTGGGTTCTTTCAAGATTGGGTTTTGAGAAAGCTACATTAAATGAGACCGTAGGAATGAAAGCTGGGATCGTGGGGATCGTAGAACTGGCAGTGGAATATCAACTCTCATACAAACTCTTTTCCGAGTTGTCAATCCTAATGCTAGCCAGCATTTTGATACATGGCATCAAGATCTCTTCTATTGAATTGCACGACCTGCGGTCTGATCTAAGTATTATCCCTTAG

Protein Analysis

475

Amino Acids

51.94

Weight (kDa)

6.52

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 48 - 166 5.4e-10 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 208 - 339 8.1e-27 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 316
Acc36I ACCTGC 2 cut(s) 393, 1407
Acc65I GGTACC 1 cut(s) 443
AccB1I GGYRCC 2 cut(s) 130, 443
AccBSI CCGCTC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 195
AciI CCGC 9 cut(s) 80, 104, 174, 540, 641, 991, 1105, 1156, 1402
AclWI GGATC 5 cut(s) 29, 157, 680, 1277, 1286
AcsI RAATTY 2 cut(s) 543, 734
AcuI CTGAAG 1 cut(s) 980
AfaI GTAC 9 cut(s) 51, 153, 379, 445, 550, 888, 967, 1022, 1100
AfiI CCNNNNNNNGG 2 cut(s) 590, 706
AflIII ACRYGT 2 cut(s) 342, 475
AgsI TTSAA 8 cut(s) 160, 669, 691, 857, 922, 946, 1215, 1388
AhdI GACNNNNNGTC 1 cut(s) 1402
AjnI CCWGG 3 cut(s) 86, 834, 1003
AluBI AGCT 6 cut(s) 70, 95, 713, 1036, 1235, 1265
AluI AGCT 6 cut(s) 70, 95, 713, 1036, 1235, 1265
Alw21I GWGCWC 2 cut(s) 652, 824
Alw26I GTCTC 2 cut(s) 267, 1241
Alw44I GTGCAC 2 cut(s) 648, 820
AlwI GGATC 5 cut(s) 29, 157, 680, 1277, 1286
AoxI GGCC 2 cut(s) 84, 1138
ApaLI GTGCAC 2 cut(s) 648, 820
ApeKI GCWGC 5 cut(s) 67, 77, 506, 635, 638
ApoI RAATTY 2 cut(s) 543, 734
AseI ATTAAT 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 861
Asp718I GGTACC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 1138
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 739, 787, 946
AsuNHI GCTAGC 1 cut(s) 1345
AxyI CCTNAGG 1 cut(s) 356
BaeGI GKGCMC 2 cut(s) 652, 824
BanI GGYRCC 2 cut(s) 130, 443
Bbv12I GWGCWC 2 cut(s) 652, 824
BbvI GCAGC 5 cut(s) 64, 79, 518, 622, 625
BccI CCATC 4 cut(s) 386, 410, 863, 936
BciT130I CCWGG 3 cut(s) 88, 836, 1005
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 267, 1241
BfaI CTAG 1 cut(s) 1346
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 2 cut(s) 393, 1407
BglII AGATCT 1 cut(s) 1374
BisI GCNGC 6 cut(s) 68, 78, 104, 507, 636, 639
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 6 cut(s) 69, 79, 105, 508, 637, 640
Bme1390I CCNGG 4 cut(s) 88, 270, 836, 1005
BmeRI GACNNNNNGTC 1 cut(s) 1402
BmgT120I GGNCC 1 cut(s) 1138
BmiI GGNNCC 3 cut(s) 132, 445, 484
BmrFI CCNGG 4 cut(s) 88, 270, 836, 1005
BmsI GCATC 2 cut(s) 840, 1377
BmtI GCTAGC 1 cut(s) 1349
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 318
Bpu1102I GCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 270
BsaI GGTCTC 2 cut(s) 267, 1241
BsaJI CCNNGG 3 cut(s) 87, 210, 411
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 4 cut(s) 264, 294, 870, 900
Bsc4I CCNNNNNNNGG 2 cut(s) 590, 706
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 4 cut(s) 53, 301, 829, 1293
Bse21I CCTNAGG 1 cut(s) 356
BseBI CCWGG 3 cut(s) 88, 836, 1005
BseDI CCNNGG 3 cut(s) 87, 210, 411
BseGI GGATG 3 cut(s) 421, 831, 928
BseLI CCNNNNNNNGG 2 cut(s) 590, 706
BseMII CTCAG 2 cut(s) 774, 1068
BseNI ACTGG 4 cut(s) 53, 301, 829, 1293
BseSI GKGCMC 2 cut(s) 652, 824
BseXI GCAGC 5 cut(s) 64, 79, 518, 622, 625
BseYI CCCAGC 2 cut(s) 95, 1265
BshFI GGCC 2 cut(s) 86, 1140
BshNI GGYRCC 2 cut(s) 130, 443
BsiHKAI GWGCWC 2 cut(s) 652, 824
BsiSI CCGG 3 cut(s) 269, 287, 932
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 590, 706
BsmAI GTCTC 2 cut(s) 267, 1241
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 2 cut(s) 86, 1140
Bso31I GGTCTC 2 cut(s) 267, 1241
Bsp1286I GDGCHC 2 cut(s) 652, 824
Bsp1407I TGTACA 1 cut(s) 548
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 9 cut(s) 80, 104, 174, 540, 641, 991, 1105, 1156, 1402
BspANI GGCC 2 cut(s) 86, 1140
BspCNI CTCAG 2 cut(s) 775, 1069
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 3 cut(s) 132, 445, 484
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 2 cut(s) 393, 1407
BspOI GCTAGC 1 cut(s) 1349
BspPI GGATC 5 cut(s) 29, 157, 680, 1277, 1286
BspT107I GGYRCC 2 cut(s) 130, 443
BspTNI GGTCTC 2 cut(s) 267, 1241
BsrBI CCGCTC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 286
BsrGI TGTACA 1 cut(s) 548
BsrI ACTGG 4 cut(s) 53, 301, 829, 1293
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 3 cut(s) 87, 210, 411
BssNAI GTATAC 1 cut(s) 196
BssT1I CCWWGG 2 cut(s) 210, 411
Bst1107I GTATAC 1 cut(s) 196
Bst2UI CCWGG 3 cut(s) 88, 836, 1005
Bst4CI ACNGT 3 cut(s) 469, 568, 1252
Bst6I CTCTTC 1 cut(s) 1384
BstAPI GCANNNNNTGC 2 cut(s) 312, 1399
BstAUI TGTACA 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 1107, 1347, 1351
BstDEI CTNAG 8 cut(s) 63, 356, 533, 714, 783, 1077, 1412, 1425
BstF5I GGATG 3 cut(s) 421, 831, 928
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 2 cut(s) 267, 1241
BstMWI GCNNNNNNNGC 6 cut(s) 83, 92, 312, 647, 828, 1399
BstNI CCWGG 3 cut(s) 88, 836, 1005
BstNSI RCATGY 3 cut(s) 346, 479, 1105
BstSCI CCNGG 4 cut(s) 86, 268, 834, 1003
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 2 cut(s) 652, 824
BstV1I GCAGC 5 cut(s) 64, 79, 518, 622, 625
BstX2I RGATCY 2 cut(s) 162, 1374
BstYI RGATCY 2 cut(s) 162, 1374
BstZ17I GTATAC 1 cut(s) 196
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 2 cut(s) 86, 1140
BtsCI GGATG 3 cut(s) 421, 831, 928
BtsI GCAGTG 1 cut(s) 1299
BtsIMutI CAGTG 6 cut(s) 186, 294, 463, 465, 822, 1299
BveI ACCTGC 2 cut(s) 393, 1407
Cac8I GCNNGC 3 cut(s) 1107, 1347, 1351
CciI TCATGA 1 cut(s) 865
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 1138
CsiI ACCWGGT 1 cut(s) 1003
Csp6I GTAC 9 cut(s) 50, 152, 378, 444, 549, 887, 966, 1021, 1099
CviAII CATG 9 cut(s) 146, 278, 343, 476, 866, 1024, 1102, 1175, 1364
CviQI GTAC 9 cut(s) 50, 152, 378, 444, 549, 887, 966, 1021, 1099
DdeI CTNAG 8 cut(s) 63, 356, 533, 714, 783, 1077, 1412, 1425
DriI GACNNNNNGTC 1 cut(s) 1402
Eam1104I CTCTTC 1 cut(s) 1384
Eam1105I GACNNNNNGTC 1 cut(s) 1402
EarI CTCTTC 1 cut(s) 1384
Eco130I CCWWGG 2 cut(s) 210, 411
Eco31I GGTCTC 2 cut(s) 267, 1241
Eco32I GATATC 1 cut(s) 846
Eco57I CTGAAG 1 cut(s) 980
Eco81I CCTNAGG 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 86, 834, 1003
EcoRV GATATC 1 cut(s) 846
EcoT14I CCWWGG 2 cut(s) 210, 411
ErhI CCWWGG 2 cut(s) 210, 411
FaeI CATG 9 cut(s) 149, 281, 346, 479, 869, 1027, 1105, 1178, 1367
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 228
FatI CATG 9 cut(s) 145, 277, 342, 475, 865, 1023, 1101, 1174, 1363
FauI CCCGC 2 cut(s) 998, 1098
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 6 cut(s) 68, 78, 104, 507, 636, 639
FokI GGATG 3 cut(s) 428, 818, 915
Fsp4HI GCNGC 6 cut(s) 68, 78, 104, 507, 636, 639
FspAI RTGCGCAY 1 cut(s) 316
FspBI CTAG 1 cut(s) 1346
FspI TGCGCA 1 cut(s) 316
GlaI GCGC 1 cut(s) 316
GluI GCNGC 6 cut(s) 68, 78, 104, 507, 636, 639
GsaI CCCAGC 2 cut(s) 99, 1269
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 2 cut(s) 86, 1140
HapII CCGG 3 cut(s) 269, 287, 932
HhaI GCGC 1 cut(s) 317
Hin1II CATG 9 cut(s) 149, 281, 346, 479, 869, 1027, 1105, 1178, 1367
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 5 cut(s) 12, 742, 955, 1119, 1179
HpaII CCGG 3 cut(s) 269, 287, 932
HphI GGTGA 3 cut(s) 739, 787, 946
Hpy166II GTNNAC 6 cut(s) 196, 294, 650, 822, 937, 1045
Hpy188I TCNGA 8 cut(s) 331, 614, 810, 960, 1078, 1124, 1327, 1408
Hpy188III TCNNGA 7 cut(s) 16, 515, 770, 866, 943, 1215, 1372
Hpy8I GTNNAC 6 cut(s) 196, 294, 650, 822, 937, 1045
HpyAV CCTTC 2 cut(s) 638, 955
HpyCH4III ACNGT 3 cut(s) 469, 568, 1252
HpyCH4IV ACGT 1 cut(s) 917
HpyCH4V TGCA 8 cut(s) 306, 506, 563, 578, 650, 822, 1190, 1393
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 92, 312, 647, 828, 1399
HpyF3I CTNAG 8 cut(s) 63, 356, 533, 714, 783, 1077, 1412, 1425
HpySE526I ACGT 1 cut(s) 917
Hsp92II CATG 9 cut(s) 149, 281, 346, 479, 869, 1027, 1105, 1178, 1367
HspAI GCGC 1 cut(s) 315
KpnI GGTACC 1 cut(s) 447
LmnI GCTCC 2 cut(s) 488, 1033
Lsp1109I GCAGC 5 cut(s) 64, 79, 518, 622, 625
LweI GCATC 2 cut(s) 840, 1377
MabI ACCWGGT 1 cut(s) 1003
MaeI CTAG 1 cut(s) 1346
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 2 cut(s) 253, 977
MbiI CCGCTC 1 cut(s) 176
MboII GAAGA 3 cut(s) 172, 505, 1371
MflI RGATCY 2 cut(s) 162, 1374
MhlI GDGCHC 2 cut(s) 652, 824
MluCI AATT 5 cut(s) 426, 543, 734, 1191, 1388
MlyI GAGTC 1 cut(s) 949
MmeI TCCRAC 1 cut(s) 874
MroXI GAANNNNTTC 1 cut(s) 861
MseI TTAA 3 cut(s) 41, 363, 1241
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 3 cut(s) 269, 287, 932
MspR9I CCNGG 4 cut(s) 88, 270, 836, 1005
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 3 cut(s) 88, 836, 1005
MwoI GCNNNNNNNGC 6 cut(s) 83, 92, 312, 647, 828, 1399
NciI CCSGG 1 cut(s) 270
NheI GCTAGC 1 cut(s) 1345
NlaIII CATG 9 cut(s) 149, 281, 346, 479, 869, 1027, 1105, 1178, 1367
NlaIV GGNNCC 3 cut(s) 132, 445, 484
NsbI TGCGCA 1 cut(s) 316
NspI RCATGY 3 cut(s) 346, 479, 1105
PagI TCATGA 1 cut(s) 865
PciI ACATGT 2 cut(s) 342, 475
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 1278
PctI GAATGC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 861
PfeI GAWTC 4 cut(s) 12, 742, 1119, 1179
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 6 cut(s) 69, 79, 105, 508, 637, 640
PleI GAGTC 1 cut(s) 949
PpsI GAGTC 1 cut(s) 949
PscI ACATGT 2 cut(s) 342, 475
PshBI ATTAAT 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 86, 834, 1003
PspFI CCCAGC 2 cut(s) 95, 1265
PspGI CCWGG 3 cut(s) 86, 834, 1003
PspN4I GGNNCC 3 cut(s) 132, 445, 484
PspPI GGNCC 1 cut(s) 1138
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 2 cut(s) 162, 1374
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 9 cut(s) 51, 153, 379, 445, 550, 888, 967, 1022, 1100
RsaNI GTAC 9 cut(s) 50, 152, 378, 444, 549, 887, 966, 1021, 1099
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 3 cut(s) 41, 363, 1241
SatI GCNGC 6 cut(s) 68, 78, 104, 507, 636, 639
Sau96I GGNCC 1 cut(s) 1138
SchI GAGTC 1 cut(s) 949
ScrFI CCNGG 4 cut(s) 88, 270, 836, 1005
SduI GDGCHC 2 cut(s) 652, 824
SexAI ACCWGGT 1 cut(s) 1003
SfaNI GCATC 2 cut(s) 840, 1377
SfcI CTRYAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 5 cut(s) 426, 543, 734, 1191, 1388
SsiI CCGC 9 cut(s) 80, 104, 174, 540, 641, 991, 1105, 1156, 1402
SspMI CTAG 1 cut(s) 1346
StyD4I CCNGG 4 cut(s) 86, 268, 834, 1003
StyI CCWWGG 2 cut(s) 210, 411
TaaI ACNGT 3 cut(s) 469, 568, 1252
TaiI ACGT 1 cut(s) 920
TasI AATT 5 cut(s) 426, 543, 734, 1191, 1388
TatI WGTACW 4 cut(s) 548, 886, 1020, 1098
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 4 cut(s) 12, 742, 1119, 1179
Tru1I TTAA 3 cut(s) 41, 363, 1241
Tru9I TTAA 3 cut(s) 41, 363, 1241
TscAI CASTG 6 cut(s) 193, 301, 463, 472, 829, 1299
TseI GCWGC 5 cut(s) 67, 77, 506, 635, 638
TspDTI ATGAA 7 cut(s) 162, 585, 747, 854, 1040, 1163, 1274
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 6 cut(s) 193, 301, 463, 472, 829, 1299
Tth111I GACNNNGTC 1 cut(s) 278
VneI GTGCAC 2 cut(s) 648, 820
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 2 cut(s) 543, 734
XceI RCATGY 3 cut(s) 346, 479, 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 1 cut(s) 1346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.